Virgibacillus salidurans: KFZ58_03590
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Entry
KFZ58_03590 CDS
T08697
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vik
Virgibacillus salidurans
Pathway
vik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ58_03590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vik03019
]
KFZ58_03590
03009 Ribosome biogenesis [BR:
vik03009
]
KFZ58_03590
Enzymes [BR:
vik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFZ58_03590
Messenger RNA biogenesis [BR:
vik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFZ58_03590
Ribosome biogenesis [BR:
vik03009
]
Prokaryotic type
rRNA helicases
KFZ58_03590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
GRP
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
UJL48162
LinkDB
All DBs
Position
666260..667699
Genome browser
AA seq
479 aa
AA seq
DB search
MGFEESTPIQAETIPLAMQGNDVIGQAQTGTGKTAAFGIPMIEKIDPKQRKIQGLIVAPT
RELAIQVAEEINRLAKFKGLRALSIYGGQHMERQIRALKDGPHIVVATPGRLLDHMRRKT
IRINMVQTAVLDEADEMLNMGFIDDIKDILKGIPEERQTLLFSATMPKEIRDIATNLMKN
PKEVKIKAKEMTVENIDQYFIEIPEKFKFETLNNHLDINAPELALIFSRTKKRVDEITEG
LQARGFRAEGTHGDLTQGKRTSVLNKFKNGRIDLLVATDVAARGLDISGVTHVYNFDIPQ
DPESYVHRIGRTGRAGKTGEAISFITPREIGHLKSIEKVTKSKMKRLMPPTNKDAQRGQQ
QVTVDKLNKTIEQKDLQAYHETANELLQENDSITVIAAALKMLTKERRDTPVRISSVAPI
SVKGPQRSKDNNRRNNKRYYGGGGRNQGGRNQGGRNQGGRNQGGRSRKGSYQNRRNSNY
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgaagaatcaacaccgatccaagcagagacaattccacttgcgatgcaaggg
aatgacgtcataggacaagcccaaactggaactgggaaaacggcagcttttggtattcct
atgatcgaaaaaatcgatcccaaacaaagaaaaattcaagggttaattgtagctcctacg
cgtgagctagcaattcaggttgccgaagaaatcaatcggttggcaaaatttaaaggactg
cgtgctttatccatttatggtggtcagcacatggaaagacaaatacgtgcgctgaaagac
ggcccacatattgtggttgcaacaccaggcagattgctcgatcatatgcgcagaaaaaca
atccgtatcaatatggtacaaactgcagtattggatgaagcagacgaaatgctgaatatg
ggtttcattgatgatattaaagatattctaaaagggatcccggaagaaagacagacccta
ttattttcagcaacaatgccaaaggaaatccgtgatattgcaacaaacctaatgaaaaat
ccgaaagaagttaaaatcaaagcaaaagaaatgacggtcgaaaatattgatcaatatttt
atcgagatcccggaaaaattcaagttcgaaacacttaacaatcatttagatattaatgca
cctgaattggcgttaatattcagcagaacgaaaaaacgtgtcgatgaaataacggaaggt
ctgcaggcaagaggcttccgcgctgagggtacgcacggggatctgacgcaaggcaagcgt
acctctgtattaaacaaatttaagaacggcagaattgatttattagttgctacagatgtt
gcggcgcgtggtttggatatttccggtgtgacacatgtatataactttgatatcccgcag
gacccggaaagttatgtacacagaatcggacgtacgggcagagctggtaaaacaggtgag
gctatttcctttatcacaccaagagaaattgggcatctaaaatccattgaaaaagtcaca
aaaagtaaaatgaaacgtctgatgccaccaacaaacaaagatgcacaaagaggccagcaa
caagttactgtagataaactcaacaaaacaatcgaacaaaaagatctgcaagcatatcac
gaaactgcaaatgagttattgcaggaaaatgactccataacagttatcgctgccgcattg
aagatgcttacgaaagaacgcagagatacaccagtaaggatttcctccgtggcaccgatt
agtgtaaaagggccacaacgctccaaagataataatcgcagaaataataagcgatattat
ggtggtggcgggcgcaatcaaggcggacgcaaccagggtggaagaaatcaaggtggtcgc
aaccaaggtggacgaagccgaaaaggaagctaccaaaaccggaggaacagtaattactaa
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