Virgibacillus salidurans: KFZ58_09825
Help
Entry
KFZ58_09825 CDS
T08697
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vik
Virgibacillus salidurans
Pathway
vik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ58_09825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vik03019
]
KFZ58_09825
03400 DNA repair and recombination proteins [BR:
vik03400
]
KFZ58_09825
Enzymes [BR:
vik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFZ58_09825
Messenger RNA biogenesis [BR:
vik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFZ58_09825
DNA repair and recombination proteins [BR:
vik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KFZ58_09825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
TniB
Motif
Other DBs
NCBI-ProteinID:
UJL48117
LinkDB
All DBs
Position
complement(1907478..1909028)
Genome browser
AA seq
516 aa
AA seq
DB search
MNSQIMLEDSLKTHFNYTAFRLGQKQIIEDIMKGKDVLGILPTGSGKSICYQLPAALLDG
TVIVVSPLISLMVDQVKQLKAVNFKEAIALNSFMPPLERKRAYDHLHRYKLIYISPELLQ
KNEIMGYLRNLKIRLFVIDEAHCISQWGHEFRPDYLKLASIIQSLHNPPLLALSATATPD
VQQDIISALNTPNITKHIYPMDRDNIAFNIEQVADDTEKQSIITKVLSNYQVPALIYFSS
RKMAENTARILSEQLPLKRIAFYHGGMEQYDRITIQQQFMNDQLDVICCTSAFGMGVNKD
NIRLVIHFHLPTQIEAYIQEVGRAGRDGESSVSLLLFSKKDEYLPRKIIKNELPTVDDLE
LVFNQLYELYQAGELLPSDMTQVENLFQINEIQWRFLTYQFGKHGMIEGNRIIYQQKNWE
QAFQQINKHRIDRSSLKENKLREMLTWIHEKECLRKHLYKSFQSSYSNAKYQCCSNCGFS
FANWKPVEKRIQETPATTWQDKLKKLLLVGATDETK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaattcccaaattatgctggaggatagcttgaaaacccattttaactacacagctttt
cgtttagggcaaaaacaaattatagaagatattatgaaaggaaaagatgtactagggatt
ctgcccaccggttctggtaaatcgatttgctaccaattgcctgccgcattgttagatgga
acagtgattgttgtctctccccttatttcgttaatggtagatcaggtgaaacaattaaaa
gctgtgaattttaaagaggctatcgcattgaatagttttatgccaccactagaaagaaaa
cgtgcatatgatcacttacataggtataagttaatctatatttctcctgaattattacag
aagaatgagatcatggggtatttgcgcaacttaaagatacgtttattcgttatcgatgaa
gcacattgtatatcccaatgggggcatgaatttcggccggattatctgaagcttgcctct
attatacaatcacttcataatccgcctttattagcattaagtgcaacagcgacaccagac
gtacagcaggatattatctctgctttaaatacgccgaacattacaaaacacatttatccg
atggacagagataatattgcctttaatattgagcaggttgctgatgatacggagaaacaa
tcaataattaccaaggtactttcaaactaccaggttcctgcattaatttatttttcaagc
agaaaaatggcggaaaacacagcccgaatcctctctgaacagctgcctttaaagcgaatt
gcattttaccatgggggaatggaacaatatgaccgaattacgattcagcaacaatttatg
aatgatcaattggacgttatatgctgtacaagcgcattcggaatgggggtcaataaagat
aatattcgcctagttatacattttcatctacctacgcaaatagaagcatacattcaggag
gtaggccgtgccggaagagatggagagtcgagtgtcagtttattgttattctctaagaag
gatgaatatcttccaagaaaaatcataaaaaatgagctcccaacagtggatgatttagaa
ttggtatttaaccaattatatgagttatatcaagctggagaattacttcccagcgatatg
acgcaagtagagaatttattccaaatcaatgaaatacaatggcgttttttaacctatcaa
tttggaaagcatggtatgattgagggaaatagaattatttatcagcagaaaaattgggaa
caagcatttcaacaaatcaataagcatcgaatcgaccgttcttcactaaaagagaacaaa
ttaagggaaatgctcacgtggatccacgaaaaggaatgtctaagaaaacatttatataaa
agctttcaatcctcttatagcaatgccaaataccaatgttgcagcaattgcggattttca
tttgcaaattggaaaccagttgaaaagcgtatacaggaaactcctgcaacaacgtggcag
gataaactaaaaaaattactattagttggggcaactgatgaaacaaagtga
DBGET
integrated database retrieval system
