Varroa jacobsoni: 111262060
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Entry
111262060 CDS
T07417
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
vja
Varroa jacobsoni
Pathway
vja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111262060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111262060
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111262060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_17
TPR_8
TPR_16
TPR_12
TPR_11
TPR_7
ANAPC3
TPR_9
TPR_CcmH_CycH
PPTA
TPR_10
TPR_Slam
HAT_Syf1_CNRKL1_N
ARM_TT21_C
DUF4219
Motif
Other DBs
NCBI-GeneID:
111262060
NCBI-ProteinID:
XP_022691769
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MRIRVRDIQSFLNKTKAPYLPSSIMNTRTLLKDARQCLESADYERSIELCEAILKQETDH
YTALLLLGAAATASANSDHAAKALKALVRATEIKKDQKAPWQGLLRLLRKHPELDRPFYR
KVLQRVIDTTMDEKICRLLYVEMAELDADWKLLDKSFTAGVEAEDMSVVNRIAQVALDLF
DRRQCVPDNIELLRKLTKIKTLNPDVQVPLILRYMFLLPATEIEPEFSTISSGLSTDIVD
KLAVEIFVERELAVIQPQRIHKALQAHPKKELPKYIISKAKLCLIANDISGLEEACHVLL
DLDASNYDAWKLRLEGLMRTRQFRDVETTAKEAIRVCNKEHVGYLLIYIARALHGQCRYR
ETLTVLDRAEKVGGKARAALRIQCLLETGKVREALDLSVASGEQGWALQARMELGEELNL
DNSELNAYGMTTAIRYLMYKMRHNDALKVATAAISRDGQNTELMTLLGEAYLALGHPVQA
VKCLQQSFLANQYDDRTGKLFSRTLRLLGIHDQNLCLLESVTKDGTIHDGNCWAFAELGL
YHLEHGEPVNAVGPLQKAINLKPCSLVFELLAEAYAARKSFAAAVLCFSKSIELGSDHEA
FVKYRLACIARDQNQLEEAIELFEEALQADQTSAFCAHDMAQTCLVLARNKLREALRGPA
RRFLSRGLVVAAQPICGGHSRVVCLWNILGDIMMQAMESNLELQPPTDTKLRMLLGLSED
DAVLRPDKLCALAEKCFMRCLSLNSNLPNVWHNMAVMSAAKGEFDQSLSCMKRAISLDPK
SAHLWSSFGVLAVRAKLSPKFAQSAFIRALAIDPDLAPAWTNLGFIYMKSGLLHEANQCF
TRAQAVDPLNLECWLGQATLAATVKHFDACDLYRHSNQLRPTGEALVCHMAILSSQNNVK
ETMPKDVPEEMVNACERCMDSFEGHNACATAGYVLLTHGLTIEAETVLSRCGCSTCRILM
AQSAAIREDWQECSRQLDGLEGEEVEKLKAYKAWKVNGQLDKAVALVPELGEIYDNTKTS
VELTRKSLERAVRQNPRCEKSWRRLAECLIEEGRWKTAVRVTEFMAPPHQPEGLLLWTVA
HAMADRKRSAYSAAASLVRNFPDKPQHWTLLRWTSLAIEKRNLPIPDHYEDVNQADWKEF
AIKVRTLDDTLKSGKVPPPRVLTIVEETTGERQCRKLIELLSQKKITKTFFTLATGLLKA
DPQSEAGLFLTGLWSAVNGSKDLYSRCFNALPCQGSLKKLLEQQHSYVQKSEAALRGAHL
E
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgcgtataagagtgagagacatacaaagcttcttaaacaaaacaaaagccccttatttg
cccagcagcattatgaatacgaggactttgcttaaagatgcccgccagtgcctagaatca
gccgactacgagcgtagcatcgaactttgcgaagcaatcttgaagcaagagaccgatcac
tataccgcactgctcctccttggtgccgcagcgaccgcatcagctaattcggatcatgct
gcgaaagcactcaaagcactggtgcgtgccacagagattaaaaaggaccagaaggcgcct
tggcaaggtctgctcagacttttaagaaaacacccggaactggacaggcccttttaccga
aaggtccttcaaagggttattgacaccaccatggatgagaagatctgcagacttctctac
gttgaaatggccgaactcgacgctgattggaaacttcttgataaaagctttactgcgggc
gttgaagccgaggatatgtcagttgtcaatcggatcgctcaagtggctttggatcttttt
gacagacgacaatgtgttccggacaatattgaactgcttcggaaactaacgaagataaaa
actctcaatccagacgtgcaggtaccgttgattttgaggtacatgtttctactcccggct
acggaaattgagccggaattttcaacgatttcgtcaggactgtcgactgacattgttgat
aagctggcagtagaaatttttgtggaacgagaattggctgttattcagcctcaaaggatt
cataaagcattgcaggcacatcccaagaaggaacttcccaagtacatcattagcaaggca
aaactgtgtttaattgctaacgatatctctggtctcgaagaagcttgccatgtccttctc
gatttagacgcgtcaaactatgacgcctggaaattacggcttgagggtcttatgcgaaca
cgccagtttcgcgatgtcgaaacaacagcaaaagaggctattcgagtttgcaacaaggag
catgtcggctatctcctaatttatatagcacgtgcgctacacggacagtgtcggtatcgc
gagacgttgacagttcttgaccgagcagagaaggttggaggaaaagctcgcgcagctctg
cgaattcaatgccttcttgaaaccgggaaggttcgagaggccttagatttatcggtagct
tccggtgaacagggatgggcacttcaagcccgaatggagcttggagaagagctgaattta
gacaattccgaacttaatgcatatggaatgacaactgctattcgatatctaatgtataaa
atgaggcacaacgatgccttgaaagttgccacggccgccatcagtcgagatggccagaat
acggagctaatgactctgcttggcgaagcctacttggcgttggggcatccagttcaggct
gtaaaatgcttacaacaaagctttcttgcgaaccagtatgatgatcggacgggaaagttg
tttagtagaacacttcgattacttggaattcacgaccagaatctttgtcttcttgagtca
gttacgaaggatggcacgatacacgatggcaactgttgggcatttgcagagttgggtttg
tatcatttggagcacggagaaccggtcaatgccgtaggtccccttcagaaggccattaac
ttgaaaccgtgttcattagtgttcgaactactcgcagaagcatacgcggcacgaaaaagt
tttgcagcagcggtcctctgtttttccaagagcatcgaattaggaagtgaccacgaggca
ttcgttaagtacaggttggcctgtatcgctcgagatcaaaatcagctcgaagaagctata
gaattattcgaggaggctttacaagcggatcaaacatcagctttttgcgctcatgatatg
gcgcaaacatgccttgttcttgcccgcaacaagcttcgggaggctctgcgtggaccagcc
agacgcttcctgagtcgcggacttgtcgtcgctgctcagccgatctgtggtggccatagc
agggttgtatgcctctggaacatacttggagacataatgatgcaagcaatggagagtaac
ctagagctacaacctcctacggacaccaaactgcgcatgctactaggcctttcagaagac
gatgctgttctaaggcctgacaaactctgtgctctagcagaaaagtgctttatgcgatgt
ttgtcattgaattccaatttacctaatgtgtggcataacatggctgtcatgtccgccgcc
aaaggagaattcgaccaaagtttgtcctgtatgaaacgggccatctctcttgatcccaag
tcggcccacctatggagctcatttggtgttttggctgtgcgagcgaaactttcacccaaa
ttcgcacaatcggcttttatccgcgcacttgccatagatcccgatctcgcacctgcctgg
acaaatctcggtttcatttacatgaagagcggtttacttcatgaagctaaccagtgcttt
acacgagctcaagctgttgacccgttaaatctcgaatgctggcttggtcaagccacattg
gcagctactgtaaaacattttgacgcctgtgatctctatcgacattcaaatcagcttcgc
cctacaggtgaagctctagtctgtcatatggcaatcctaagcagccaaaacaacgttaag
gaaacaatgccgaaggatgtgcctgaggaaatggtgaacgcctgtgaaagatgtatggat
tcatttgaaggacataatgcctgtgccactgctggttatgtgcttctaacacatggttta
actatcgaggccgagacagtattatcccgttgtggatgctcaacttgtcgcatactaatg
gcacaaagtgcggcaattcgagaagattggcaggaatgctcccgtcagcttgatggtttg
gaaggcgaagaagtcgaaaaactgaaggcttacaaagcatggaaagtaaacggacaactt
gacaaggctgtcgcacttgttcctgaactgggagagatctacgataacacaaagacaagc
gtggagttaacacgtaagtctcttgaacgagctgtgcgtcaaaatcctcgatgtgaaaaa
tcctggcgccgactagcagagtgtcttatcgaagagggccggtggaagactgcagtacgt
gtcactgaatttatggctccaccccatcagcctgaagggcttctgttgtggacggtagca
catgcaatggctgatcgtaaacgaagtgcgtacagcgcggctgcgagtctcgtgcgtaat
tttcctgataaaccccagcactggacgctgcttcgatggactagtttggcgatcgagaag
cgcaacttacctatacccgaccattatgaagacgtgaaccaagcagattggaaggagttt
gcgatcaaagtgaggacgctggatgacacactcaaaagcggcaaagttcctccacctcga
gtattgaccatcgttgaggagaccactggcgaacgtcaatgtcgaaagctgatcgaactc
ctgtctcagaagaagattacaaagacatttttcacactagctacaggtctacttaaagcc
gatccgcagtctgaggccggactatttttgacagggctatggtcagcggtcaacggctcg
aaggacttgtatagtcggtgtttcaatgctttgccctgtcaaggttccctcaagaagctc
ttagagcagcaacatagctatgtgcaaaaatccgaagcagccttaagaggagcgcactta
gaataa
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