Vibrio japonicus: NP165_01265
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Entry
NP165_01265 CDS
T08510
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NP165_01265 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vjp03021
]
NP165_01265 (rpoB)
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_01265 (rpoB)
Enzymes [BR:
vjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NP165_01265 (rpoB)
Transcription machinery [BR:
vjp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NP165_01265 (rpoB)
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NP165_01265 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Cas_Cas2CT1978
DSRM_MRPL44
Motif
Other DBs
NCBI-ProteinID:
UUM30828
UniProt:
A0ABY5LJ45
LinkDB
All DBs
Position
1:254023..258051
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKIRFEVKDQTLLME
LVPDRLRGETASFDIEANGKVYVETGRRVTARHIRQLEKDGIEHIEVPVEYIVGKVASKD
YINEATGEIIAAANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETVRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIEREDAQEQGTL
DEQDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDNIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIQEGQYVIAQANTVLTEEGTFADELITARQKGESGLHPREHAQYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVLRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLHRVQAVLIEGGYTEAKLDSIDRKKWLELTLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FRDFLQKVYDLGETRQKVDVASLSDDEVRTLIKNLRGGLPIATPVFDGANEASIKELLKL
GDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gttttggacattccatacctgctatcgatccagctcgattcgttcgaaaaattcatcgaa
caggatcctgaggggcaatacggtcttgaggctgctttccgttctgtattcccgattcag
agctacaacggcaattccgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggcgtaacttattcaaagccactacgcgtaaaacta
cgcctagttatttttgataaagacgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtaccttcgttatcaatggt
accgagagggttatcgtatcccagctgcacagaagcccaggcgttttcttcgacagcgat
aagggtaagacccactcatcaggtaaagttctatacaacgcacgtatcattccttaccgt
ggttcatggcttgatttcgagtttgatcctaaggataacttgtacgtacgtattgaccgc
cgtcgtaagcttccagcatctatcattcttcgcgcactaggtaagacgacagaagagatc
ctggacatcttcttcgagaagatccgctttgaagtaaaagatcaaactctactaatggag
ttggttcctgatcgtctacgtggtgaaactgcgtcattcgatatcgaagcaaacggtaag
gtttacgttgaaacgggtcgtcgtgttacagctcgtcacattcgtcaacttgaaaaagac
ggcattgaacacatcgaagtaccagtagagtacattgttggtaaagttgcatcgaaagat
tacatcaacgaagcgactggcgagatcatcgctgctgcaaaccaagaaatcagccttgaa
gcgctagcgaacctttctcaagcaggccataaagcactagaagttctatttacgaacgat
ctagaccacggtccattcatgtcagaaactgtacgtatcgacagcactgttgatcgtatt
tctgcactggtagaaatctaccgcatgatgcgccctggtgagccgccaacgaaagaagct
gctgaagctctattcgaaagcctattcttctctgaagagcgttacgatctatcgactgtt
ggtcgtatgaagttcaacagctctatcgagcgtgaagacgcacaagagcagggtacgctt
gatgagcaagacatcatcgaagtgatgaagaagcttatcgcgattcgaaacggtattggt
gaagtggacgatattgaccacctaggcaaccgtcgtatccgtagcgttggcgaaatggca
gagaaccagttccgcgtaggtcttgtacgtgttgagcgtgcagttaaagagcgtctaagt
cttggtgatcttgataacatcatgcctcaagatcttatcaacgctaagcctatttctgcg
gcagtgaaagaattctttggttcttctcagctttctcagtttatggaccagaacaacccg
ttatcagaagtaacgcacaagcgtcgtatttctgcattgggtcctggcggtctaactcgt
gaacgtgctggcttcgaagttcgagacgtacacgtaactcactacggccgtctatgtccg
atcgaaacgccggaaggtccaaacatcggtctgatcaactctctatctgcgtttgcacgt
tgtaacgagtacggtttcctagagactccataccgtcgtgttgtagatggcgtagtaaca
gacgaagtagattacttatctgctattcaagaaggtcagtacgttatcgctcaggcgaac
acggttctgactgaagaaggtacattcgctgatgagctaatcactgctcgtcaaaaaggt
gaatctggtcttcacccacgtgaacacgctcaatacatggacgttgcaactaaccaggtt
gtatcgatcgctgcatcacttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccaactcttaaagctgacaagcctctagtt
ggtactggtattgaacgtaacatcgcagttgactctggtgttactgctgttgctaagcgt
ggtggtgtaatccagtctgtagatgcttctcgtatcgttgttaaagtaaacgaagaagag
ttgattcctggtgaagcaggtatcgatatctacaacctaactaaatacactcgttcaaac
caaaacacgtgtatcaaccagcgtccatgtgtgatgccgggtgaaccagtactacgtggc
gacgttcttgctgatggtccttcaacagaccttggtgaactagcacttggtcagaacatg
cgtatcgcgttcatgccttggaatggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacaacaatccacattcaagagctatcttgtgtggca
cgtgatactaagcttggtgctgaagaaatcacagctgacattccaaacgtaggtgaatct
gctctgtctaagctagacgagtcaggtatcgtttacatcggtgcggaagtgaaaggcggt
gacatccttgtaggtaaagtaacgcctaaaggtgaaactcagctaactcctgaagagaag
ctactacgtgcaatcttcggtgagaaagcgtcagacgttaaagatacgtctctacgcgta
ccaaactcagtttcaggtactatcatcgacgttcaagtatttactcgtgacggtgtcgaa
aaagacaagcgtgcacttgaaattgaacagatgcagctaaaagaagcgaagaaagacctt
actgaagaattccagattcttgagggtggccttctacaccgtgttcaagctgtactaatc
gaaggtggttacactgaagcgaagctagactctatcgaccgtaagaagtggttagagcta
acgcttgaagatgatgctctacagactcagcttgagcaactagcagagcagtgggacgag
ctaaaagctgacttcgataagaagttcgaaactaaacgtcgtaagatcactcaaggtgat
gatctagcacctggcgtactgaagatcgttaaggtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgttatctctaagatcaac
cctgttgaagacatgccttacgatgaaaaaggtcagccggtagacatcgtactgaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagttcacttaggtctggca
gcgaaaggtatcggtgacaagatcaaccaaatggtgaaagagcagcaagagctggctaag
ttccgtgacttcctacagaaagtttacgatcttggcgaaactcgtcagaaagtagacgta
gcgtctctatctgatgatgaagttcgtacgctgatcaagaacctacgtggtggtttaccg
attgctactccagtattcgacggtgctaacgaagcatcaatcaaagagcttctaaaacta
ggtgacctgccagagtctggtcagctaacgctatttgatggtcgcacaggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttcaactggctcgtacagcctagtaactcagcagccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgctacaagaaatgctaaccgttaagtcggatgacgttaacggccgt
actaagatgtataagaacatcgtagacggtaaccacagcatggaacctggcatgccagaa
tcgttcaacgtattgttgaaagagatccgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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