Varanus komodoensis (Komodo dragon): 123025519
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Entry
123025519 CDS
T07701
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123025519 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vko03019
]
123025519 (CNOT1)
Messenger RNA biogenesis [BR:
vko03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123025519 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123025519 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
123025519
NCBI-ProteinID:
XP_044290268
Ensembl:
ENSVKKG00000010521
LinkDB
All DBs
Position
Unknown
AA seq
1894 aa
AA seq
DB search
MLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAM
AEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAGSV
SQELSETILTMVANCSNVMNKSRQPPPGVMPKGRPPSASSLDAISPVQIDPLAAGMASLS
LGGSAAPHTQSMPGFPPNLSSAFSTPQSPAKAFPPLSTQNQNTPFSGIGGLSSQLPVGGL
TTGSLGIGTGALGLPAVNNDSFVPRKLSTSGLSQPAFQQSKMKPSDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFPSKMYYFGIAALDRFK
NRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQA
QAQVPSKAPLAGQVSTIATTSTTTTTVAKTTITPVGRVSFKKDVPPSINTTNIDTLLVAT
DQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE
PNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI
TLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMAI
MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKD
VKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPSIPL
FQAHPQLKQCVRQAIDRAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAH
HMMRNLTAGMAMITCREPLLVSIATNLKNSFATVLRAASPQQRDMMEQAAAQLAQDNCEL
ACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG
GVDPKQLAVYEEFARNVPGFLPTNDSTQPTGILAQPMKQAWATDDVAQIYDKCMAELEQH
LQSIPHALAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLL
RYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQY
DLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRGNA
PEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL
YHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPA
ANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQ
SEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELI
SHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELAKPMQILYKGTLRVLLVL
LHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAP
RILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYV
GTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTH
YFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEF
VHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgttggtcttggctttactacaaatcaacacttcctggcatactttacggcatgaactc
atctccacacttatgcccattttcctcggcaaccaccccaactctgccatcatcttgcat
tatgcatggcatgggcagggtcagtcgccttccattcgtcagctcattatgcacgctatg
gcagaatggtacatgagaggggaacagtacgaccaggcaaagttatcacgtattctagac
gtggctcaagacttgaaggccttgtcaatgctgctaaatggtactccgtttgccttcgtt
attgaccttgctgcacttgcctctcgacgggaatacctcaaactagacaaatggctcaca
gacaaaattcgggagcatggggagcccttcatccaagcctgtatgacattcttaaagaga
agatgtccctctatcttgggtggccttgccccagagaaagaccagccgaaaagtgcccag
cttcctccagagacactcgcaacgatgctggcttgccttcaggcttgtgctgggagtgtc
tcgcaagagctgtcggaaactatcctcaccatggtagccaactgcagcaacgtcatgaac
aaatctagacagcccccacctggagtgatgcccaaaggacgtccccccagcgctagtagt
ctagatgccatctctcctgtacagatcgatcctcttgctgctggaatggcatccctcagt
ttaggcggttcagcggctccacacacccagagtatgccaggctttcctccaaacttgagt
tcagcgtttagtactcctcagtcaccagcaaaagcgtttccaccactttccacccaaaac
cagaacacaccattcagtgggattggtggcctctcttcacagcttccagtaggtggtctt
acaacaggtagcttgggtattgggactggggcccttggcctccctgcggtgaataacgac
tcctttgtaccaagaaaactgagtacatcaggactgagccagcctgcgttccagcagagt
aagatgaaaccttctgacttatctcaggtatggccagaggctaatcagcactttagcaaa
gagattgatgatgaagccaacagctattttcagcgtatttataatcacccaccacatcca
actatgtctgttgatgaggtgttagaaatgctgcagaggtttaaagactccaacattaaa
cgggaacgcgaagtatttaactgtatgctgaggaacttgtttgaggaatatcgttttttt
ccccagtaccctgataaagagctgcacataacagcctgcctctttggtgggataatagag
aaaggactggttacatacatggcgctgggcctggccttgcgctatgttcttgaagcctta
cgaaagccttttccatccaaaatgtactattttggtattgctgcactagatagatttaaa
aatagattgaaggactatcctcagtattgtcagcacttggcttctattagtcactttata
cagttccctcatcacctgcaggagtacattgaatacggacagcaatccagagaccctcct
gtgaagatgcaagggtctatcaccacccctggaagtattgcacttgcccaggcacaggcc
caggcacaggttccgtcaaaagcccctcttgctggtcaagttagcactatagccaccacc
tccactaccacgaccactgtggccaagactacaatcactccagtgggtcgggtcagcttc
aaaaaggatgtaccgccttctattaatacaaccaacattgatactctgctagtggctaca
gatcagacagagagaattgtggagcctccggaaaatgttcaggagaagattgcattcatc
ttcaacaacctgtcacaatccaacatgacgcagaaggttgaggaactgaaggaaacagta
aaagaggaattcatgccttgggtttcacagtaccttgtgatgaagagagttagcattgag
ccaaacttccacagcctttattccaatttccttgacacacttaagaatccagaattcaac
aaaatggttctgaacgaaacctacagaaatattaaggtgctactcacgtcagataaagct
gctgccaacttctcagaccgctccttgttgaagaacctgggtcactggctgggcatgatc
acactggctaaaaataaacccatcttgcatacggacttggatgtgaaatcgctgctgctg
gaggcttacgtcaagggccagcaggagctgctgtatgttgtgccatttgtggccaaagtt
ttggaatccagtgtcaggagtgtggtcttcaggcctccaaacccttggaccatggcaatc
atgaatgtactagcggagctgcaccaggaacatgacttaaaactgaatctgaagtttgag
atagaagtgctctgcaagaaccttgcccttgacatcaatgaactgaaacctgggaacctc
ctcaaagacaaggatcggttgaaaaatctggacgaacagctctctgctccaaagaaagac
gtgaaacagccagaggagctgccaccaattacaaccaccactgcttccactacaccggct
accagcaccacctgcaccgcaaccgttcctccgcaaccgcagtacagttaccacgacatc
aacgtttactctctgggagggctggctccacacatcactctgaacccttccattcccctg
ttccaagcccatccacagctgaagcaatgtgtgcgccaagccatcgaccgggcagtccaa
gagctcgtccacccggtggtggaccggtccatcaaaatcgccatgaccacttgcgagcag
atagtgaggaaggactttgcactagactcggaggagtcccgcatgcgtgtagcggcacac
cacatgatgcggaacctgactgctggtatggccatgattacctgtagggagcccttgctg
gtgagcatcgctaccaacctgaagaacagctttgccaccgtgttgcgggcagcttcgccg
cagcagcgggatatgatggagcaagccgcggcgcagctggcccaggacaactgtgagctg
gcgtgctgcttcattcagaagaccgccgtagaaaaagccggccctgagatggataagagg
ctggccaccgaatttgagctcagaaagcacgccaggcaagagggccgtaggtactgcgat
cccgtcgtcttgacgtaccaggcggaacggatgcccgagcagatccgattaaaggttggc
ggcgtggacccaaagcagctagctgtgtatgaagaatttgcacgaaacgtccccggtttc
ctaccaaccaacgactcaacccaacctacaggcatcctggcacagcctatgaagcaagcc
tgggccacagacgacgtggcacagatctacgacaaatgcatggcagaactggagcagcac
ctgcagtccatccctcacgccctggccatgaacccgcaggcgcaagccctgcggagcctc
ttggaggccgtcgtcgtggcacggaactcgcgtgatgccattgcagcccttgggctcctg
cagaaggctgtggaaggcttgttggacgccaccagcggtgctgatgccgacctgctcctg
cgctaccgggagtgccacttgctggtgctgaaagcgcttcaggatggccgggcatacggg
tctccctggtgtaacaagcagatcaccaggtgcttgattgagtgtcgagatgaatataag
tacaacgttgaagcggtggagctactgatccgtaaccaccttgtgaacatgcagcagtat
gacctccacctggcccagtccatggagaatggcttgaactacatggcagtggcatttgcg
atgcagctggtgaagatcctcttggtggacgagagaagtgtcgctcacataacagaagca
gatctgtttcacactatcgaaactctgatgaggatcaatgctcattccagggggaatgcg
ccagaaggattgccgcagctgatggaagtggtacggtccaactacgaggccatgattgac
cgtgctcatggcgggcccaactttatgatgcactctggaatatctcaggcctctgagtac
gatgatccccctggtctgcgggagaaggcagagtacctcttgagggagtgggtgaatctc
tatcactctgctgcagccggccgtgacagcaccaaggcgttctctgcatttgttggacag
atgcatcaacaaggaatcctgaagactgatgacttgatcacgagattcttccgtctttgc
actgaaatgtgtgtcgagatcagctatcgggcacaagccgagcagcagcacaaccctgct
gcaaaccccaccatgattcgtgccaagtgctaccacaacctggatgcttttgtgcgcctc
attgcgctgctggtgaagcattctggggaggccaccaacactgtcacgaagatcaacctg
ctcaacaaggttcttgggatagtggtgggagtccttctccaagatcacgacgtccggcag
agtgaatttcagcagcttccctaccaccgcatcttcatcatgttgctgttggaattaaat
gctcctgaacatgtcctggaaaccataaactttcagacgctcacagctttctgtaacaca
tttcacatcctgagacctacaaaagctcctggctttgtttatgcctggctagagctgatc
tcccatcggatatttatcgcaagaatgctggcacataccccacagcagaagggttggcct
atgtatgctcagctgttgatcgacctgtttaaatatttagccccttttctgcggaacgtg
gaacttgccaaacctatgcaaatcctgtataagggcactctgcgtgtgctgttggtctta
ctacatgatttcccagaattcctctgtgactaccactatggattctgtgatgtgatccct
ccaaactgtattcagctacggaatctcatcttgagtgccttcccacgaaacatgaggctt
ccagatcccttcactcccaaccttaaggtggacatgctgagcgagatcaatattgctcca
aggatactcaccaatttcacaggtgtgatgccgcctcagttcaagaaggatttggattcc
tatctgaaaacccgctctccagtcacattcctctccgagttgcgcagcaacttgcaggtc
tccaacgagcctggcaaccgctacaacatccagctgatcaatgcgctggtgctgtatgtg
ggcacccaggctattgcgcacattcacaacaaaggcagcacgccctccatgagcaccatc
acccactcggctcacatggacatcttccagaacctcgctgttgatttggacacagaaggt
cggtacctcttcttgaacgcaattgccaatcagctacgctacccaaatagtcacactcac
tattttagctgcactatgctttacttatttgcggaagccaacactgaagctattcaagag
cagatcaccagagttttgttagagcggctgattgtaaacagacctcacccttggggtctc
ctaattaccttcattgagctgataaagaacccagcatttaagttttggaaccatgaattt
gttcactgtgctccagaaattgaaaagctgttccagtcggtggcacaatgttgcatgggg
caaaaacaggcacaacaagtaatggaaggaactggagccagttag
DBGET
integrated database retrieval system
