Vibrio mimicus: AL543_10310
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Entry
AL543_10310 CDS
T04381
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
vmi
Vibrio mimicus
Pathway
vmi00521
Streptomycin biosynthesis
vmi00541
O-Antigen nucleotide sugar biosynthesis
vmi01100
Metabolic pathways
vmi01110
Biosynthesis of secondary metabolites
vmi01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
AL543_10310 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
AL543_10310 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
AL543_10310 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
AL543_10310 (rfbB)
00525 Acarbose and validamycin biosynthesis
AL543_10310 (rfbB)
Enzymes [BR:
vmi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
AL543_10310 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Sacchrp_dh_NADP
KR
Motif
Other DBs
NCBI-ProteinID:
AMG03393
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Position
2:883941..884993
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AA seq
350 aa
AA seq
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MKILVTGGAGFIGSAVVRHVIQNTQNSVVNLDKLTYAGNLESLASVAGSERYAFEQIDIC
DRAELDRVFAEHQPDAVMHLAAESHVDRSIDGPAAFIETNIIGTYTLLEAARHYWSQLES
ERKAAFRFHHISTDEVYGDLEGTDDLFTETTAYEPSSPYSASKASSDHLVRAWLRTYGLP
TIVTNCSNNYGPYHFPEKLIPLMILNALEGKALPVYGDGMQIRDWLFVEDHARALYKVVT
EGLVGETYNIGGHNEKANIEVVNTLCALLEELVPNKPAGVAHYADLITYVKDRPGHDVRY
AIDASKIERELGWKPEETFESGIRKTVEWYLHTHEWWSRVLDRERYEIHV
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttgtcaccggtggcgctggttttattggctctgcggttgttcgccatgtc
atccagaacactcaaaacagtgtcgtaaacttagataaattgacttatgcaggcaattta
gaatctttagcgtcagtggctggtagcgaacgttatgcttttgagcaaatcgatatctgt
gaccgtgccgagctcgaccgtgtctttgcagagcatcaacccgatgcggtaatgcactta
gcggctgaatctcatgttgaccgctctattgatggtccagcggcctttatcgaaaccaat
attattggcacctataccctcctcgaagcggctcgtcattactggagccagttggagagt
gaacgtaaagccgcgtttcgttttcatcacatttcaaccgatgaggtgtatggcgattta
gaaggtacggacgacctctttactgaaacgaccgcctatgaaccaagtagtccttattct
gcgtctaaggcatccagtgaccacttggtgcgcgcttggctacgtacttatggtttaccc
actatagtcaccaactgctcaaacaactacggcccgtatcattttccagaaaagctcatt
ccattgatgattttgaacgcactggaagggaaagccctgcctgtgtatggcgatggtatg
caaattcgcgattggctgtttgtcgaagaccacgcacgagcattgtataaagtggtgact
gaaggtcttgtgggtgaaacctacaacattggtggacacaatgaaaaagccaatattgaa
gtcgtaaacacactctgtgcattacttgaagagttggtaccgaataagcccgcgggtgtt
gcgcactacgccgacctcattacttacgtcaaagaccgcccagggcatgacgttcgttac
gcgattgatgcgtcgaaaatcgagcgagagctgggctggaagccagaagagacctttgaa
tccggtattcgcaaaaccgtagagtggtatttacatacccatgaatggtggagccgagtg
ttggatagggaacgctatgagatccatgtttaa
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