Vibrio neocaledonicus: D3H41_16155
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Entry
D3H41_16155 CDS
T06228
Name
(GenBank) sensor domain-containing phosphodiesterase
KO
K20964
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
D3H41_16155
Enzymes [BR:
vnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
D3H41_16155
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GFIT
Motif
Pfam:
EAL
FIST
FIST_C
GGDEF
YPEB_N
Motif
Other DBs
NCBI-ProteinID:
QCO87453
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All DBs
Position
1:complement(3259831..3262317)
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AA seq
828 aa
AA seq
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MRAFSKLVHDVSQLNDFLVTFPTSSDKQYLVQILSTQSREITTTLADAVLSSLPNAHVMG
HSTRNVILEGEIFTSGCLVSVIEFEQTTLTSAVQTYSYSPDIDGGELKRSLLMQHNSQVI
LSFAVQIERRDYPLFQTFASEEVVISGGLAQSIDDGCWVLYQNRVYDNAVVAVALHSDTL
KLWTDAYSEWNPIGMPHKVTHAKGTRLYCLGEKKALDVYKRYLADGHDVTLSQLLSFPLY
RESLGRKEVCTVTELHADGSMSFDRPWCLGDEVQFCYNHPSLTLEQVRHGVVELAMHQPE
VVMIFNCASRLDFIDSSDEVQAFKDIATTFGSYCMGELHGGIGQPEILHHSLTYLAMREG
DEVQTLNLPKSPVSSSISPLFSLIRNAIGDLNHMNAHMGYQLDRQTRKLQESYRRDSRTG
LQNRVALQERLSNIDLDEHLLTLKLLNFSHINEKYGYRVGDQLLKDLSMHFTNRLRKRFG
MPTALQLYSIGVGEWAFIFKADQSSETIKQHFTRFADAVEQTNFEPIGLREIDYLSISLC
GGLVSRRDFPSASVDELLLKGIEARRSGVRSNTHICNAKDIEVSEDVRKEQLGWLSCVSR
AILKQNIITYSQPIVHAGSHKLASQECLVRILEADGTVIAPGRFLPIISDTHLYTRLSRH
MIHSTLHYMRDKQGDFSINLSPQDLLSDKTLMLLEHEISQLNDPRRIGLEVLESEQIKDY
GRMIEVCSHFRSLGARIIVDDFGSGYSNIDEILKLEPEVIKLDGSLIRDIDKDLKQRKIA
SQLVRLCQVFNAETVAEFVHNQEVCTIAQDMGVDYLQGYYLGEPTRLF
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgcgagctttttcaaaactggttcacgatgtcagtcaactgaatgactttttagtcact
tttccgacttcctcagataaacaatatttagtacaaatattgtcgacgcagtcgcgcgaa
attacgaccacacttgcagacgccgttttgtcgtcgctgccgaatgctcatgttatgggg
catagtacgcgtaatgtgattctggaaggggagatatttacctctggttgcctagtgagt
gtgattgaatttgagcaaaccacgctgacttctgcggtacaaacatactcttactctcct
gacattgatggcggggagctcaagcgctctcttctaatgcagcataattcacaggtgatc
ctcagctttgctgtgcaaattgaacgacgtgactatcccttgtttcaaaccttcgccagt
gaagaagtagtgatttctggagggttggcgcagagtattgacgatggctgctgggtgcta
tatcaaaaccgagtttacgataacgctgtggttgccgtagctttgcacagtgatactttg
aagctatggactgatgcgtattcggaatggaacccgattggcatgccacacaaagtcact
catgcaaaaggaacgcgcttgtattgtttaggtgagaagaaagcgctggacgtatacaag
cgttacttggcggatggccatgacgtgacgctgagtcaactgctcagctttccattgtat
cgagaaagcttagggcgaaaggaagtttgtacggtaacggagctgcacgctgatggcagt
atgagcttcgacaggccctggtgtcttggtgacgaagtgcaattttgctataaccatccc
tcgttaacgctcgagcaagtgcggcatggtgtggttgagttagccatgcaccaacctgaa
gtcgtgatgatttttaactgcgcgtcacggttagactttattgacagcagcgacgaagtc
caagccttcaaagatattgcgacgacgtttggtagttactgtatgggggaactgcatggt
ggtattggtcagcccgaaattcttcatcacagcctgacgtatttagcgatgcgagaggga
gacgaagtgcaaacattgaacttgcctaagtcgcccgttagctcctctatttcaccgttg
tttagcttgattcgaaatgcgatcggcgatctcaaccatatgaacgcgcatatgggatat
caactcgatcgccaaacgcgcaagttacaagaaagctatcgacgcgacagtcgcacggga
ttacaaaaccgggtcgcattgcaagagcggctgagtaacatcgatttggatgagcatttg
ttgactctaaagctacttaactttagtcatatcaacgaaaaatacggctaccgagtggga
gatcaattactcaaagatctctcaatgcactttacgaatcgactacgaaagcgtttcggc
atgccaacggctttgcagctttatagtattggggttggtgagtgggcattcatatttaaa
gctgaccaaagcagcgaaaccatcaaacagcactttacgcgttttgctgatgcggtagaa
caaactaattttgagccaattggcctacgtgaaatagattatctttctatctcgctatgc
ggcggcttagtgagtcgtcgagactttccatccgcttcagtggatgagctcttactcaaa
ggcatcgaagcgaggcgctctggtgtacgcagtaatacccatatctgtaatgcgaaagat
attgaagtcagtgaggatgtgcgtaaagagcaacttggatggctaagttgcgtcagtaga
gccattctcaaacagaatatcatcacttatagccaacctattgtgcatgcgggtagccac
aaattggcaagccaagaatgtttggttcgtattctggaagccgatggaacggtgattgcg
ccagggcgttttctgccaattatctctgatacgcatctttacactcgactaagtcggcac
atgattcattctacgttgcattatatgcgagataagcaaggtgacttttctataaactta
tcgccgcaagatttgctcagtgataaaactttaatgcttttagagcatgaaattagccag
ctaaatgacccaaggcgaattggtttagaagtgctggaatctgagcagatcaaagactac
ggccgaatgatagaagtgtgcagtcattttagaagcttaggggcgcgtatcattgttgat
gactttgggtccggttattcgaatatcgatgaaatcctgaagttggagccagaagtcata
aagctcgatggcagcttgattcgtgatattgataaagacttaaaacagcgcaagatcgct
tcccaactggtgcgtttgtgccaggtgtttaacgcggagacggtggcggagttcgtccac
aatcaggaggtgtgtaccattgcacaagacatgggggtggattatttgcagggttactat
cttggcgagccgactcgactgttttaa
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