KEGG   Vibrio neptunius: KW548_00535
Entry
KW548_00535       CDS       T08906                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vnp  Vibrio neptunius
Pathway
vnp02024  Quorum sensing
vnp03018  RNA degradation
vnp05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vnp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KW548_00535 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KW548_00535 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    KW548_00535 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vnp03019]
    KW548_00535 (hfq)
   03036 Chromosome and associated proteins [BR:vnp03036]
    KW548_00535 (hfq)
Messenger RNA biogenesis [BR:vnp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     KW548_00535 (hfq)
Chromosome and associated proteins [BR:vnp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    KW548_00535 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QXX06693
LinkDB
Position
1:complement(117197..117463)
AA seq 88 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGERPQGGERQQEKSED
NT seq 267 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccattcttaaatgcattacgtcgtgaacgtatt
cccgtatcaatctacctagtaaacggaattaaactacagggtcagattgagtctttcgat
caatttgtgatcttgctgaaaaacaccgtcaaccagatggtatacaagcacgctatctcc
acagtagtgcctgctcgtccagttagccaccatagtggtgagcgtcctcagggcggcgag
cgtcagcaagagaaatcagaagattaa

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