Vibrio parahaemolyticus BB22OP: VPBB_A0038
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Entry
VPBB_A0038 CDS
T02409
Name
(GenBank) ADA regulatory protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VPBB_A0038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpb03000
]
VPBB_A0038
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_A0038
Enzymes [BR:
vpb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
VPBB_A0038
Transcription factors [BR:
vpb03000
]
Prokaryotic type
Helix-turn-helix
AraC family
VPBB_A0038
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VPBB_A0038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AGB11412
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All DBs
Position
2:36876..38243
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AA seq
455 aa
AA seq
DB search
MFIHPHTSLTFEQCQKARVSRDSRFDGRFYVAVKTTGIFCRPICPANLPKEENVEYFTDK
AQALKAGYRPCLRCRPDSAPGSWAWKGVETTFQRAISLIDRGELHHHSVSELAERVGISD
RYLRMLFEQYLGMSPKQYAQYQQLMFAKQLLHSSSMSVTEVGFAAGFNSTRRFNDAFQKF
LKLTPSQVRRREFDGVSTNRIALSYRGELNWQHMLDFYRLRAIEGVERVSGESYQRNVCL
DNSKAWFQAIKGEGNLELEFEIEEVAKLQNLVSGVRRMFDLDTDICTVEQHLDYVAPGLV
SNRGIRIPGVWNAWEAGVRAILGQQVSVKAAIGQLNLLVKTLSGDADKRFFPTPDAIANA
DVSFLRMPQSRKETLVRFAQFMQNNAETDPQQWLALKGIGPWTVSYAQLRGQSQPDCFLD
KDLVVKKAMQRYPSLNTHTAAPWGSYATFHLWNQS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtttatccatcctcatacatcgttgaccttcgagcagtgccaaaaggcgcgagtgtcg
cgagacagccgttttgatggtcgattttacgtcgcggtaaaaaccacagggattttctgc
cgaccgatttgtccggcgaacctacccaaagaagaaaatgtagagtacttcaccgataaa
gcccaagcccttaaagcgggttatcgtccttgtttgcgttgtcgcccagacagcgcgccg
ggatcgtgggcatggaaaggcgtagaaacaacatttcaacgcgcgatttcgttgattgat
cgaggagagctgcatcaccactcggtgtctgaactggcagaacgcgttgggatttctgat
cgttacttgcgtatgttgttcgagcagtatctcggcatgtcaccaaaacagtacgcgcaa
tatcagcagttaatgttcgccaaacagttgctgcattccagttcgatgtcggttacggaa
gtcggcttcgccgccggttttaacagcacgcgtcgtttcaacgatgcgttccaaaagttt
ctgaagctcacgccttctcaagttcgtcgaagagaatttgatggcgtgagcacgaatcga
attgcgttgtcttatcgtggtgagttgaattggcaacacatgctggatttttaccgacta
agagccattgagggcgtggagcgggtgagcggcgagagttaccaacgcaacgtttgtctg
gataacagcaaagcgtggtttcaggcgatcaaaggtgaaggaaaccttgagcttgaattc
gaaattgaagaagttgcgaagctgcaaaatttagtgtctggagtgcggcgtatgttcgat
ctcgacaccgatatttgtactgtcgagcagcatttggattatgtggcaccggggcttgtt
tcgaaccgaggcattcggattcctggagtgtggaatgcttgggaagccggggttagagcc
attcttggtcaacaagtgtcggtcaaggccgcgataggccagcttaatttattggtgaaa
acgctcagtggtgatgctgacaagcgctttttcccgacgccagatgcgattgcgaatgcc
gacgtgagttttttgcggatgccgcaaagtcgtaaagagacgttggtgcgtttcgctcag
tttatgcaaaacaacgcggagacggatccgcaacaatggttagcgttgaaaggcattgga
ccttggacggtcagttatgctcaactgcgtgggcaatcccaacccgattgctttttagat
aaagacttagtggtgaaaaaagcgatgcagcgctacccatcactcaatacgcacaccgca
gccccttggggaagctacgcgacgtttcacttatggaatcaatcatga
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