Variovorax paradoxus B4: VAPA_1c23720
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Entry
VAPA_1c23720 CDS
T02835
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd02024
Quorum sensing
vpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAPA_1c23720 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VAPA_1c23720 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_1c23720 (hfq)
03036 Chromosome and associated proteins [BR:
vpd03036
]
VAPA_1c23720 (hfq)
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VAPA_1c23720 (hfq)
Chromosome and associated proteins [BR:
vpd03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
VAPA_1c23720 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AGU49474
UniProt:
T1XAW7
LinkDB
All DBs
Position
1:2534493..2534738
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AA seq
81 aa
AA seq
DB search
MSNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STIVPGRAVNFSAAENDDAAA
NT seq
246 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaataaagggcaacttctacaagacccgtttctgaacaccctgcgtcgcgagcat
gtgccggtctccatttatctggtgaacggtatcaagctgcagggccagatcgagtctttc
gaccagtacgtcgtgttgcttcgcaacacggtgacgcaaatggtctacaagcacgccatc
tccaccatcgtgccgggtcgtgccgtcaacttctcggctgccgagaacgacgacgccgca
gcctga
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