KEGG   Variovorax paradoxus B4: VAPA_1c23720
Entry
VAPA_1c23720      CDS       T02835                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd02024  Quorum sensing
vpd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VAPA_1c23720 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VAPA_1c23720 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpd03019]
    VAPA_1c23720 (hfq)
   03036 Chromosome and associated proteins [BR:vpd03036]
    VAPA_1c23720 (hfq)
Messenger RNA biogenesis [BR:vpd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     VAPA_1c23720 (hfq)
Chromosome and associated proteins [BR:vpd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    VAPA_1c23720 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AGU49474
UniProt: T1XAW7
LinkDB
Position
1:2534493..2534738
AA seq 81 aa
MSNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STIVPGRAVNFSAAENDDAAA
NT seq 246 nt   +upstreamnt  +downstreamnt
gtgagcaataaagggcaacttctacaagacccgtttctgaacaccctgcgtcgcgagcat
gtgccggtctccatttatctggtgaacggtatcaagctgcagggccagatcgagtctttc
gaccagtacgtcgtgttgcttcgcaacacggtgacgcaaatggtctacaagcacgccatc
tccaccatcgtgccgggtcgtgccgtcaacttctcggctgccgagaacgacgacgccgca
gcctga

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