Variovorax paradoxus B4: VAPA_1c36230
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Entry
VAPA_1c36230 CDS
T02835
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAPA_1c36230 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_1c36230 (pnp)
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c36230 (pnp)
Enzymes [BR:
vpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VAPA_1c36230 (pnp)
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VAPA_1c36230 (pnp)
Transfer RNA biogenesis [BR:
vpd03016
]
Prokaryotic type
tRNA degradation factors
VAPA_1c36230 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
Phage_tube
DUF5813
SLS1_KH2
Methyltransf_3
aRib
Motif
Other DBs
NCBI-ProteinID:
AGU50705
UniProt:
T1XF19
LinkDB
All DBs
Position
1:complement(3826175..3828490)
Genome browser
AA seq
771 aa
AA seq
DB search
MSLFNKVTKSFQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTL
SLNPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLV
VAGTEAAVLMVESEALQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAE
DEAFVAKVKSLAEEKLRAVYQIRSKQARTQALREANASVMNALKEGGEPFDAGKVNDLLF
SIEAKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVITTLGT
ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIA
STDPEKAELAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERPAGMEYSERPPREDRGDRGDRGG
ERRERSDRGDRGGDRGERAPRFNNEQQQQPRNEQQPAPVGEQPYAPREPQE
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcaacaaagtcaccaagtccttccaatggggcgacaagaccgtcgtcatg
gaaacgggtgaaatcgcccgccaggccagcggcgccgtggttgtcgacatcgacggcacc
gtgatcctcgcgaccgtggtcgcctccaagaccgccaagccgggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgcgggcaagatccccggcagcttcttc
aagcgcgaagccaagcccagcgaacacgaaaccctgaccagccgcctgatcgaccgtccg
atccgcccgctgttccccgagggcttcctgaacgaagtgcacgtggtcatccacacgctg
tcgctcaaccccgaagtcgacgccgacatcgccgccatgatcggcgtgagcgccgccctg
tcgatctccggcattccgttcagcggcccgatcggtgctgcccgcgtgggctacatcaac
ggccagtacgtgctgaatccgggccagaccgcccgcaaggattcgcagatggacctcgtg
gtggccggcaccgaagccgccgtgctgatggtcgaatccgaagccctgcagctcagcgaa
gaaatcatgctgggcggcgtggtgttcggccacgagcaggccaacatcgcgatcaacgcg
atccatgaactcgtgcgcgacgccggcaagccggtgtgggactggcaagcgccggccgaa
gacgaagccttcgtggccaaggtcaagagcctggccgaggaaaagttgcgcgccgtctac
cagatccgcagcaagcaggcccgcacgcaagccctgcgcgaagccaacgccagcgtgatg
aatgcgctgaaggaaggcggcgagcccttcgacgccggcaaggtcaacgacctgctgttc
tcgatcgaagccaagatcgtccgcagccagatcctctcgggcgaaccccgcatcgacggc
cgtgacacgcgcaccgtgcgccccatcgagatccgcaactccgtgctgccccgcacccat
ggttcggcactgttcacgcgcggcgagacgcaaggcctggtcatcaccacgctcggcacc
gagcgcgacgcgcagcgcatcgacgcgctggccggcgagtacgaagaccgcttcctgttc
cactacaacatgcctccctttgccaccggcgaagtgggccgcatgggctcgaccaagcgc
cgcgaaatcggccacggacgcctggccaagcgcgcgctcgtcgccgtgctgccgaccaag
gaagaattcccgtacaccattcgcgtggtgtcggaaatcaccgaatccaacggctcctcg
tcgatggcctcggtgtgcggcggctgcctctcgatgatggacgccggcgtgccgatgaag
gcccacgtggccggcatcgccatgggcctgatcaaggaagacaaccgcttcgcggtgctg
accgacatcctgggcgacgaagatcacctgggcgacatggacttcaaggtggccggcacg
accaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgcactggcccaggccaaggaagcgcgcatgcacatcctcggcaagatgcag
gaagccatgggcgaggccaagaccgaggtgtcgcagttcgcaccgcgcctgaccacgctg
aagatcaatcccgagaagatccgcgacgtgatcggcaagggcggcgcggtcatccgcggc
ctgcaggaagaaaccggcacgacgatcaacatcgacgaagacggcacgatcaccatcgcc
tcgaccgaccctgaaaaggccgagctcgccaagaagcgcatcgagcagatcacggccgaa
gtcgaaatcggcaaggtctacgaaggcccggtcaccaagatcctggacttcggcgcgctc
atcaacctcctgcccggcaaggacggcctgctgcacatcagccagatcgcgcacgagcgc
gtcgagaaggtgaccgactacctgagcgaaggccagatcgtcaaggtcaaggtgctcgag
accgacgaaaagggccgcgtcaagctgtccatgaaggccctgaccgagcgtccggccggc
atggaatacagcgagcgcccgccgcgcgaagaccgtggcgaccgcggtgaccgtggcggc
gagcgccgcgagcgctcggaccgcggcgaccgtggtggcgatcgcggcgaacgcgctccg
cgtttcaacaacgagcagcaacagcagccgcgcaacgagcagcagccggcgcccgtcggc
gagcagccgtacgcaccgcgcgaaccgcaagagtaa
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