Veillonella parvula: Vpar_1213
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Entry
Vpar_1213 CDS
T01130
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vpr
Veillonella parvula
Pathway
vpr03410
Base excision repair
vpr03430
Mismatch repair
vpr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Vpar_1213
03430 Mismatch repair
Vpar_1213
03440 Homologous recombination
Vpar_1213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpr03400
]
Vpar_1213
DNA repair and recombination proteins [BR:
vpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Vpar_1213
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Vpar_1213
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Vpar_1213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PhoU
Motif
Other DBs
NCBI-ProteinID:
ACZ24893
LinkDB
All DBs
Position
complement(1390714..1392699)
Genome browser
AA seq
661 aa
AA seq
DB search
MMIKKKRWRLCEGDREKENILIRELGVNPIVAKLMVNRHIDVDEGRRFLQGTLSDLLDPF
TLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQSE
GYGLNLEALKHLIERGTDLVITVDCGISSYDIVEAVRDRINMIITDHHTAPDVIPRAKAV
INHKQKDCPYKDKNLSGVGVAFKLCQALWLTKHGEWYLDDLDIVALGTVADVVPLVGENR
IIVKSGLEKMNSYPNLGINKLIDVAGLHERTITSGHIGYTLAPRLNAAGRVTHATRAVEL
LVTDDADIAEAIAEELNETNRERQELERNIHELARIDVANQGHKADYVTIVAGEEWHPGV
IGIVASRLVEEFYKPTLVISIHDGVGKGSCRSIDGFNIYDALKSCEDILLQFGGHSAAAG
FSIDANRIDELRYRLTKYCKEVVTAEEYIPVVAIDAELPVDDIDVDIIDRVSDLEPYGMA
NSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNGTLDAIAWNCPDLFRSIFVGTVVKVA
FSLQKNEWQGLVSPQLMIQAIEPLTEEPIKLSTEGLRQMYVIIKQSMRGRSQSVYNVEQD
ILRRKPADQNNRSALTSIDVFKELGIVEEYTSDDGQLMLRWNAIEGKLDLVTSVTFLTYS
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgatgattaagaaaaaacgttggcgcctttgtgaaggtgacagggagaaagagaatatc
ttaatccgtgaacttggtgtgaaccctattgtggctaaattaatggtgaatcgtcatatt
gatgttgacgaaggtcgtcgatttttgcaaggtactttgtcagatttgttagacccattc
actttgaaagatatggatgtggctgtttcactagttctggaaacaattgaaagtcacaaa
ccaatcgtcatttatggtgattatgatgtggatggtattactgcaacctctgtactctat
cgatttttaaagaaattaggtgctgatgttacatattacataccagaacgtcaaagcgaa
gggtatggtctcaatttagaggctttaaagcaccttattgaacggggaacggatttggta
attaccgtagactgcggcattagctcttacgatattgtagaggctgtacgggaccgcatc
aatatgattattacggatcaccatacggctccagatgtgattccacgagcgaaggccgtc
ataaatcataagcaaaaggactgtccttataaggataaaaacttatctggcgtaggggtt
gctttcaaattatgccaagctttgtggcttacaaagcacggagaatggtacttagatgat
ttagatatcgttgcacttggcactgtggccgatgtagtacctttggtcggtgagaaccgc
atcattgtgaaatcgggccttgagaagatgaatagctatcctaatttggggattaataag
ctaattgatgtagcggggcttcatgaacgaactatcacctctggacatattggctatact
ttagcacctcgccttaatgcagctggtcgcgtaacgcatgcaacgcgtgctgttgaacta
ctcgtgaccgatgatgcagatatagcagaggcaattgcagaggaattaaacgaaacgaat
cgtgaacgacaagagctagaacgaaatattcacgagttggctcgtatagatgtagctaat
caaggacataaagctgattatgtaactattgtggccggcgaagagtggcatcccggtgtc
attggtattgttgcttctcgtctagtagaggagttttacaaaccaaccttagttatcagt
attcatgatggcgttggtaaaggctcgtgccgtagtatagatggctttaacatatatgat
gcattaaaatcttgcgaggatatcttgctacagtttggcggacactctgcggcggcaggt
tttagcatcgatgcaaatcgtattgatgagttacgataccgtttaactaagtattgtaaa
gaagttgttactgctgaggaatatattcccgttgtggccattgatgcggaactacctgtt
gatgatatcgatgtcgatatcattgaccgcgtatcagaccttgagccttatgggatggcc
aatagcacgccagtctttgccattatggaagctactgtgcaagatattatgctcatgggg
caattaaaaaatcactgtaaggtaatttttgcaacttcgaatggtacattagatgctata
gcttggaattgtccagatttatttagatctatcttcgtgggaactgtggtaaaagtggca
ttttctttgcaaaagaatgaatggcaaggtctggtttctccgcagcttatgattcaagct
attgaaccattgactgaagagccgattaagctttctacagaaggacttagacaaatgtat
gtcataataaaacagtccatgcgaggtcgcagtcagtcggtttataatgttgaacaagat
atattgcgtcgcaagccggcagatcagaataatcgcagtgctctaacatctatcgatgta
tttaaagaattgggcattgttgaagaatatacaagtgatgatggtcaattaatgctgaga
tggaatgccattgaaggaaaattagatcttgtcacatccgtaacattccttacttatagt
gtatag
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