Vespula pensylvanica (western yellowjacket): 122636369
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Entry
122636369 CDS
T07720
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122636369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vps03019
]
122636369
Messenger RNA biogenesis [BR:
vps03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122636369
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122636369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122636369
NCBI-ProteinID:
XP_043683451
LinkDB
All DBs
Position
21:complement(460957..471413)
Genome browser
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLTKKNFRDSCKEISILVQWKGLEADRHLLRSLLSYVDFSTG
EPPESSAKDYFQVQLLKQECTNLLSKPSLISNFCFAIDHPLHHQKTLNSSPKFFLHLKKV
LGLTLVQEVAFAIVLQHSENIDIRALAHEHIKKQLPELIKNYINSETSNKHHEEGLHDSS
PEVLHLILSQVFHIPNQFGVSSEAKEKFLKNLRRDFPRELVPVVLAPLLYPGDGETPQAK
IELNMAVNQMDGNSLVELIMELGYGFTSSVEECRSALAGLGAREISPACVARVLAHMARS
CNSLDDAGGLQSFWGNSASTQDANKEKTSESIAPTTWNVEVFVQALKEIQSTLLWNEVIV
KLDHAEFIIKDRQGLNLLIMGLRLGLQHQGYPPDVFPVELFYRHWENVEGQFSLVQQILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEAQTWRSLYVVELLLHMAERGLYGPVQEIFK
WPIQHCPDVLVLALLQINPPITLLRQELLSTLMPIFLGNHPNSAVILHHAWHANNVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALSALLNAQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQECSEAIMTMVQNCSLMLNKSTMSRPPPPGVLRHRGLEPFNPATLGGQLFSSK
QVDPLGNLSSSLASMGLGSSLGPPSSSAFNLPGALGPLVSAPGSPSRLTGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGSTIGGLGRLGPPTGIEKARIPETSNLFPDMPQNVSKEIED
EANSYFQCIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQYP
DKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALRKPDGSKMYYFGITALDRFKSRL
KDYQTYCEHVRNIQHFSEFPPHLIEYIEYGLQGQEPPTRPQGPVLPKTLAAMLAPVTTPY
KTITTTTITTSTTQAKPSTTPTTSLSARPSIANATNIDTLLVATDKEEKITTPPEALQDK
TAFIFNNLSQLNLQQKCDEIREIVTEDYWPWMAQYLVMKRASIELNFHALYSNFLDCLKL
PEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQVDIDLK
SLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLN
LKFEIEVLCKNLSIDVGELKPAVYLKDPEKLRNLDYQLSHPNKKTEAGNNQQQTQAPIEE
LVGPTTTGTIVTQPAPPANTTPSLPTGPPEPRFSYMDISVTGITNISQHITINNQLPLFQ
THPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
VRNLTAGMAMITCRDQILASISTNLKQAFLTAMMGTTPQQKELAEQAATVVAADNMELAC
AFVQKTAVEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALFVPKPVTETTVAPFANNPAVAVATAQQVAAYA
AAVSNDEVGAMLEKLAAEVDVLLSAMGPAAPPPQHVALHSLLESIILTRRSRDAGAAMTL
LKKAVEGLLDGPTISSGVTDSEIVLRYRELHLRILKCLQDPRAYGMQWTNKHVTRFLTEC
REDFRYNFEAVDCLIRSHLISLPQYDLALAQAMDASNAMATAFAMQLVQLYLIDERQTTH
VTESDLFHTIEILVRIAHHRAPPEGIPLFRLTSLIDSLRANHDPAVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWVSMHHSPTHARDPTKAFGMFVHQMNIHGILKT
DDLITRFFKLSTQMCVDLCYRALAETNAVPSVVRAKCFHSLDAFVRLVALLVKHSGDTTN
THTKINLLNKVLGIVAGVLLQDHEMRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVNYQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSA
FPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPTYKFWTHEFVHCAPEIEKLFESVARSCMVQKQVQPTPEPEI
PE
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttacttggttgctaatttg
actaagaaaaattttcgggacagctgcaaagaaatatcaattttggtacagtggaaaggt
ctggaggcagaccgacatttgctgcgctctttgctctcttacgtcgatttctcaaccgga
gagccaccagaatcaagtgctaaggattattttcaagtacagcttttaaaacaagagtgt
accaatctgctcagcaagccttctctgatttctaacttctgttttgcaatagatcatcct
ttacatcatcagaagactttgaattcatcgccaaagttttttttacatctgaagaaggta
cttggactgacgttggtacaagaagttgcttttgcaattgtactacaacattctgaaaat
atcgatattcgtgcattggctcacgagcacattaaaaaacaactacctgaattaataaaa
aattatattaattcggagacaagcaataagcaccacgaggaaggcttacacgattcatcg
ccagaagttttacaccttatactttcgcaggtttttcatattcctaatcaatttggtgtt
tcttccgaagcaaaggaaaaatttctcaagaatttaaggcgcgattttccccgtgaactg
gtaccagtggtgctagcaccactcttgtatccaggcgacggggaaactccgcaagccaaa
attgaattaaacatggctgtcaatcaaatggatggcaattcactggtagagttgatcatg
gaattaggatacggatttactagtagcgtagaagaatgtcgatcagcattagctggttta
ggagctagagaaatatctccagcatgcgttgcccgagttttagctcatatggcacgcagt
tgtaatagtcttgacgatgctggaggcttacaatcattttggggaaactctgcttctact
caagatgctaataaagaaaaaacttcagaaagcattgctcccacaacttggaatgttgaa
gttttcgttcaagctttaaaggaaatacaatcaacattattgtggaatgaggtaatcgtg
aaattggaccatgctgagtttatcattaaagatagacaaggattaaatttgctaattatg
ggcttaagattgggtttacaacatcaagggtatcctccagatgtgtttcccgttgaactt
ttttaccgacattgggaaaatgtagagggtcaattttctttagtacaacaaattttgaag
tgtcctgacatattttgttttgctgattatccataccattcggttactgttgatgtattg
aaagcagctcctgaaggagatagcaaggaagcacaaacatggagatctttgtatgtcgtc
gaactgcttctacatatggctgagaggggtttatatggaccagttcaagaaatatttaaa
tggcctattcaacattgtccagacgtacttgtcttagcattattacaaattaatccgcct
ataactttacttaggcaagaattactcagtacacttatgcctatttttcttggaaatcat
ccaaattctgcagtgattttacaccatgcgtggcatgcaaataatgtgaaaataaaatcc
attattatgcatgcaatggctgaatggtacatacgtggtgaccatgatcagacaagattg
tctcgcattttagatgttgcacaagatcttaaagcattatcagcattattgaatgcgcaa
tcatttccatttgttattgatttagcatgtctggcgtctcgacgagagtatttgaaacta
gaaaaatggttgacagataaaattagagaccacggagaagtttttgttgctgcttgtgta
aaatttttacaaagacggtgtccacaagtaatgggccctggtataaaagaagatcctaca
gtgccaaaagcaagtcagcttccgcaagaaacactcacaactattcttgcttgtttgcaa
gtatgtgccgggagtgtttcccaagagtgttctgaagctataatgacgatggtacaaaat
tgcagtttaatgttaaataaaagcactatgagtagaccaccaccaccaggggttctaaga
catagaggtttagaaccatttaatcccgcgacattaggaggacagttattttcttctaag
caagtggatccacttggaaatttaagttcaagccttgcttctatgggcttaggatctagt
ctcggaccacctagtagttctgcatttaacttgccaggagcactaggacctttagtttca
gcacctggatctccttctagattaacaggaccttctccaagcccatttccaatgttacca
ttatcttcgcaactccattctggcccagttgggacacagggtccatctgttttacccggt
agtacaataggaggcttaggacgacttggtccaccgacgggtatagaaaaagcaagaatt
cctgaaacatcaaatctatttcctgatatgcctcaaaatgtgtctaaagaaattgaagac
gaagcgaatagttattttcaatgtatatacaatcatccacctcatcccacattgtcaatc
gatgaagttcttgatatgctcaaaaaatttcaagattcaggcagcaaaagagagagagag
gtattcaattgtatgcttcgaaatttattcgaagaatatcgtttttttcctcaatatcca
gataaagaacttcaaataacagcacaattatttggtgggattattgaaagaggtttggtt
aatagttacatgacacttggattggcacttagatttgttttggatgctttgagaaagcca
gatggtagtaaaatgtattacttcggtataacagctttggatcgttttaaaagtcgtttg
aaagattatcaaacatattgcgaacatgtgagaaacatacagcattttagtgaatttcca
ccacatttaatagagtatatagagtatggtctacaaggacaagaacctcctactcgacct
caaggtcctgtcctacctaagacattagctgctatgttagctccagttacaactccatat
aaaactattacgacaacaactataacaacaagtactactcaggctaagccttccacaaca
ccaactacttcactttctgccagaccctctattgcaaatgcaactaatattgatacgttg
cttgtagcaacggataaagaggaaaaaattacgacgccgcctgaagcgttacaagacaaa
actgcatttatttttaataatcttagtcaactcaatttgcaacaaaaatgtgatgaaatt
cgagaaatagttactgaagattattggccttggatggctcaatacttagtgatgaaacgt
gctagcatcgaattaaattttcatgctttatactctaattttctcgattgtttaaaactt
ccagaagttaataaaatggttactagagaaacattcagaaatatcaaggtattattacgg
agtgataagggaatagcaaatttttctgatcgatctcttttaaaaaacttagggcattgg
cttggaatgttaactcttggtagaaataaacctattttacaggtggacattgatttaaaa
agcttactagtagaagcatatcacaaaggtcaacaagaacttctttacgttgtacctttc
gttgcgaaagttttagaaagttgtgcaaaaagtcgtgtttttcgtcctcctaatccatgg
acaatggcaattatgaatgtgctagcagaacttcatcaagagccagatttaaagttaaat
ttaaaatttgaaattgaagtgctttgtaaaaacttaagcattgatgttggagaattgaaa
ccagcagtttatctaaaagatcctgaaaaattacgtaacttggactatcaactgtcacat
ccaaataagaaaacagaagcaggaaacaatcaacaacagacgcaagcccctatcgaagaa
ctagttggacctacaacaacaggaactatagttactcaaccagcacctccagctaatact
acaccatctttacctactgggccaccagaaccacgttttagttacatggatatatctgtt
acaggcatcaccaatatctctcaacatatcaccataaataatcaattacctttgttccaa
acgcatcctcatttaaaacaatttgttcgtcctgctgttgaaagagccatacaagaatgg
attcatccagttgttgatcgatctattaaaatagctttgactacaagtgaacaaattgta
aggaaagattttgctttggatcctgaggaagtaagaatgcgaacagcagcccgtcatatg
gttcgcaatttgactgctggaatggctatgattacatgtagagatcaaattttagcttcg
ataagtacaaatttgaagcaagcctttctaacagcaatgatgggtacaactcctcagcaa
aaagaattagcagagcaagctgcaaccgttgtagctgctgataatatggaacttgcttgt
gcatttgtacaaaaaactgctgttgaaaaagcaatcccagaaatggacaaacgtttactc
aatgaaatagaattacgaaaaatcgcacgacaagaaggaagacgatactgtgatccttta
gctaaatatcaagctgaaagaatgccagaacagattcgattaaaagtaggcggagtaact
cctcaacaaatggctgtttacgaagagttcgccaggaatatacctggattcttaccatta
tctgaaagagatacacaagcacttttcgtgccaaaaccagtaacggaaactacggtagct
ccatttgctaataatccagctgttgcagtagcaacggcccaacaagtagctgcatatgca
gctgctgtaagtaatgatgaagtaggagcaatgttggaaaaacttgcagctgaggtagat
gtattgctttctgcaatgggcccagctgcaccacctccacagcacgtagcacttcatagt
cttttagagtctatcattcttactagaagatcaagggatgcaggtgctgcaatgacgctc
ctaaaaaaagccgtagaaggattattagacggtcctactatttctagcggagtcacggat
tcggaaatcgtcttacgttatagagaacttcatttacgcattctgaaatgtcttcaagat
ccacgagcttatggtatgcagtggacgaacaaacacgttactcgtttcttaacagaatgt
agagaagattttcgttataattttgaagccgtagattgcttgataagatctcatttgatc
agtcttccacaatatgatttagctctagcacaagctatggacgctagtaatgctatggca
acggcattcgctatgcagttggttcaattatatctcattgacgagagacaaacgacacat
gtaacagaatctgatctgtttcacacgattgaaatacttgtaagaatagcgcatcataga
gctccaccagaaggaattccactctttagacttactagtctaatagattcgttacgtgca
aaccatgaccctgcagtattagccgatcgtgctcctgcaggaccaacagcacacatccac
tctggaattctccaggtgagagctcgtgattttgatgatccaccaggattaatggagaag
accgaatacttattacgtgaatgggtttcgatgcatcatagtcctacccatgctcgtgat
cctactaaagcatttggaatgtttgtccatcaaatgaacatccatggcattttaaaaacg
gatgacctcataactagattttttaaattaagcactcaaatgtgcgtggacctttgttat
cgtgcattggccgaaaccaacgcagttccttctgttgttcgcgcgaaatgtttccactcg
ttagacgcttttgtgcgcttagttgcactcttggtcaaacattctggcgacacaacaaat
actcatacgaaaatcaacttattgaacaaagtacttggaatcgttgctggcgtgttattg
caagatcacgaaatgcgtggtacagatttccagcaattaccttatcatcgaattttcatc
atgctctttttagagctttgcgcccctgaacctgttttagaggctgtcaattatcaagtc
ttaacagccttctgtcatacgttacacatattgagacctgccaaagcttcaggcttttgt
tatgcctggttagagctcgtttcgcacagggttttcattggacgtatgctcgctattact
ccacaacaaaaatgttggggaatgtacgctcaacttctcatcgatttgtttaaatatctt
gcaccgtatctgcgtaatgcggaacttgcaaaacctgtgacgctcttgtacaaaggtact
cttcgagtgttactggtattactacatgatttcccagagttcctttgtgattatcattat
ggattttgtgacgtaattccacccaattgtatacaaatgagaaatctcattttaagcgca
ttcccgagaaacatgcgcttacccgatccattcactccaaatttgaaagtcgatatgctt
caagaaatcgcacacgcacctagagtacttactaattttgcttccatgattcaaccactc
agttttaagaaggaattagattcttatttgaaagctcgtgcaccggtcacctttctgtca
gaattgcgtagtaatttacaagtctctcaggaagctggtgtaagatataatattcaattg
atgaacgctttggttctttatgttggaacacaagctatcgctttcatacgtagcaaaggt
catacacctaacatgtccacgattgcacattccgctcacatggacatatttcaaaatctt
gctgttgatctcgataccgaaggtcgttacttatttttaaatgcaatcgctaatcagctt
cgctatcccaatagtcatacacattatttcagttgtacacttctatatttatttgccgaa
gctaataccgaagctatacaggaacaaattacaagggttcttcttgaaagactcattgtc
aatagacctcatccttggggccttcttattacatttatcgaactcattaagaatcctaca
tacaagttctggacgcacgagtttgtacattgtgctccagaaattgaaaaattgttcgag
tctgtagctcgatcatgtatggttcaaaaacaagtgcagcctacacccgaaccagagatt
ccggagtga
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integrated database retrieval system
