KEGG   Vitis riparia (riverbank grape): 117908862
Entry
117908862         CDS       T07274                                 
Name
(RefSeq) protein transport protein SEC13 homolog A-like
  KO
K14004  protein transport protein SEC13
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03013  Nucleocytoplasmic transport
vri04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117908862
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117908862
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117908862
   04131 Membrane trafficking [BR:vri04131]
    117908862
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117908862
Membrane trafficking [BR:vri04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    117908862
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    117908862
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    117908862
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N WD40_Gbeta ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_RFWD3 WD40_2 WD40_CFAP43
Other DBs
NCBI-GeneID: 117908862
NCBI-ProteinID: XP_034678547
LinkDB
Position
19:complement(9534286..9535002)
AA seq 189 aa
MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTVKIIGVSNNASQHLATLTGHQGPVWQ
VAWAHPKFGSILASCSCDGRVIIWKEGNQNDWTQAHVFSDHKSSVNSIAWAPHELGLCLA
CGSSDGNISVFTARSDGAWDTTKIDQAHPVGVTSVSWAPSMAPGVLVGSGLLDPVQKLVS
GGCEAVIIL
NT seq 570 nt   +upstreamnt  +downstreamnt
atgccttcacagaagatcaaaacaggtcaccaggacacagtccatgatgttgccatggat
tactatggaaagagagtggcaacagcttcatctgatagcaccgttaagataattggtgtt
agcaataatgcttcacaacaccttgctactttgactggccatcaaggccctgtttggcag
gttgcttgggcacaccccaagtttggatcaatccttgcttcttgttcctgtgatggccga
gtgataatctggaaggaaggaaatcaaaatgactggacacaagctcatgttttcagtgat
cataaatcatctgtcaactccattgcctgggcacctcatgaacttggcctctgcttggct
tgtggatcctctgatgggaatatctctgtcttcactgctaggtctgatggcgcttgggac
accacaaagatagatcaagctcaccctgttggagtaacctcagtttcatgggccccatca
atggcccctggtgttctggttggatctggtctgctggatcctgttcagaagctggtttct
ggtggctgtgaggctgtgataatactgtga

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