Vitis riparia (riverbank grape): 117912783
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Entry
117912783 CDS
T07274
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117912783
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117912783
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GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
NosD
SCP2_2
Motif
Other DBs
NCBI-GeneID:
117912783
NCBI-ProteinID:
XP_034683386
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Position
1:11885492..11887493
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AA seq
443 aa
AA seq
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MAAVKSSSLLLLFFVFFAVIAPTIRANIAEYDDYWKEREEEAKKAALEAFHPTPQEVNDH
FNLHVEDELTGSNGTRRSLRVNKGPCKATNPIDRCWRCRPNWASQRKRLADCVLGFGRNT
VGGKYGKYYFVTDPSDNDMVNPKKGTLRHAVIQPRPLWIVFARSMIIRLNQELIMTSDKT
IDGRGVNVHIAYGAGITIQFVKNVIIHGLHIHDIVSGSGGLIRDSVDHFGYRSRSDGDGI
SIYGSSHVWIDHNSMSNCKDGLIDAIEGSTAITISNNHFTKHNEVMLFGASDSNSADEIM
QITVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAIGGSAHPTIISQGNRYTAPHL
VDPKHDAKQVTKRDYAMESEWKKWTWRSEGDLMRNGAFFVPSGNPSKRMPYSRLDMIKAK
PGTYVSRLTRFSGALTCRRGGPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagttaaatccagttccttgcttctcctttttttcgtgttcttcgctgttata
gcgccaacaatacgagccaacattgcagaatatgatgattattggaaggagcgagaagag
gaagccaagaaagctgccctcgaagcattccatccgacaccgcaggaagtcaacgaccat
ttcaatctgcatgttgaggatgagctaacggggagcaatggaacaaggaggagcctgaga
gttaacaagggcccatgcaaggctacaaatcctattgatcgatgctggaggtgccgtcca
aattgggcttcacaacgcaaaaggctagctgactgtgtcctcggttttgggcggaacaca
gtaggaggaaagtatggcaaatactacttcgtgaccgatccctccgataatgacatggtg
aaccctaagaagggaacattacgccatgccgtgatccagccaaggccgctgtggattgtg
tttgctcgcagtatgataattaggctgaatcaggagctgatcatgacaagtgacaaaacc
attgatggaaggggagtcaatgtccatatcgcctatggtgccggcattacaattcagttc
gtcaagaatgtgatcatccatggcctccacattcacgacattgtttcaggctcaggagga
cttattagggattctgtcgatcactttggctatagaagcagaagtgatggtgatggaatc
tccatttatggttcatcccacgtttggattgaccataattccatgtccaattgtaaggat
ggactgatcgatgccatagaaggatccaccgccatcaccatctccaacaaccatttcacc
aaacacaatgaggtgatgttgttcggcgcaagtgatagtaactccgcggatgaaataatg
caaatcacggttgcattcaaccacttcggaaggggattgattcagaggatgccgaggtgc
cgatggggcttcttccatgttgtgaacaacgactacacccactggaacatgtatgccatt
ggcggtagtgcacatcctaccatcatcagccagggcaaccgatacacagctcctcattta
gtggatccaaaacatgatgctaagcaggtgaccaagagggactatgcgatggagtcggag
tggaagaagtggacatggagatcggagggagatctgatgaggaatggagccttcttcgtt
ccatccgggaacccctccaaaaggatgccatactctaggctggatatgatcaaagcaaag
ccagggacctatgtttcaagactcacccgtttctccggtgcacttacctgcaggcgtggt
ggaccttgttaa
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