Vitis riparia (riverbank grape): 117919641
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Entry
117919641 CDS
T07274
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117919641
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117919641
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF5026
Motif
Other DBs
NCBI-GeneID:
117919641
NCBI-ProteinID:
XP_034692739
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Position
8:18955900..18958753
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AA seq
492 aa
AA seq
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MLDVDHSRRKPTQTHPSPSPSASAMLRRTCIVLISLLSSLSALATPMQNLTLLGQHPDPE
AVVQEVQRRVNVSLSRRQTLEVSQSDQSSCVTGNPIDDCWRCDPNWEADRQRLADCAIGF
GQYALGGKGGQIYVVTDSSDHDAVTPRPGTLRYAVIQSDPLWIVFATNMLIKLSQELIFN
SYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCVQSGEANVRSSPTHYGWRTLSD
GDGISIFGSRDIWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHDEVMLLGHSDSYVP
DSGMQVTIAFNHFGEQLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGSPTINSQGNRYT
APSNRNAKEVTKRVDTDEKKWRDWNWRSEGDILVNGAFFIASGETVEVLYEKAYSVEPKS
AALIDQLTTNAGVLGGSGNNLGTWRTERSGGGYGFGDDYSENMLSGSPSSFALSSTLLPP
LFLLSSFLLLYL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgtagatcattctcggcgaaaaccaacccagactcatccttctccttctcct
tctgcatcagccatgcttcgcaggacctgcattgtcctaatctctcttctaagctcactt
tctgcacttgctacgccaatgcagaacctcaccctcctcggtcaacatccagaccccgaa
gctgttgtccaagaagttcaaagaagagtaaatgtgtcattgtcaagaagacaaacacta
gaagtgtcccaaagcgaccagtcctcatgcgtcacgggaaaccccatagacgactgctgg
aggtgcgaccccaactgggaagccgaccgccaacgcctcgccgactgcgccattggcttc
ggccagtacgccctcggcggcaaaggcggtcagatctacgtcgtcaccgactcctccgac
cacgacgccgtcacccctcgccccggcacactccgctacgccgtcatccagtccgaccct
ctctggatcgtctttgccaccaacatgctcatcaaactctcccaggagctcatcttcaac
agctacaaaaccctagacggccgcggcgccaacgtccacatcgtcggcggcggttgcatc
actctccagtacatcagtaacgtcatcatccacaacatccacatccaccattgcgtgcag
tcgggcgaggctaacgtgcggtcgagcccaacacactacgggtggcgcacactgtcggac
ggtgatggaatatcgatattcggatcacgagacatatggatcgaccactgttcgttgtcc
cattgtaaagacggtttgatcgatgccgtgatgggttccacaggcataacaatatccaac
aactttttctcgcatcacgatgaggtgatgctgttaggtcacagcgattcgtatgtgccc
gattcagggatgcaagtcactatagcatttaatcactttggtgagcagctggtgcagcgg
atgcctaggtgcagacgcggctatatacacgtggtcaacaatgattttactcgttgggag
atgtatgctattgggggtagcggtagccccaccatcaacagccaggggaatcgctatacc
gcgccgtccaatcgcaacgccaaggaggtgacgaagcgcgtggatacggatgagaagaag
tggagggactggaattggaggagcgagggggacatattggtgaacggagccttcttcatt
gcatcaggtgaaaccgttgaggttctctacgaaaaagcctacagcgtggagcccaaatct
gctgccctcattgatcaacttaccactaacgccggtgtcctcggtggcagcggcaacaac
cttggaacgtggaggacagaacgaagtggtgggggatatggttttggtgatgactactcc
gagaatatgttgagcggctcaccatcctcctttgccctttcttccactctccttcctcct
ttatttctcttatcttcctttctactcttgtacctctaa
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