Vitis riparia (riverbank grape): 117932274
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Entry
117932274 CDS
T07274
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117932274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117932274
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117932274
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117932274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
117932274
NCBI-ProteinID:
XP_034709337
LinkDB
All DBs
Position
15:complement(7416813..7491712)
Genome browser
AA seq
2425 aa
AA seq
DB search
MTHSSAAFANQIRFLLQSLNEENADHVFEELREFVDYGIEGSVLLLETCLDYLSRAELKN
TQVEAICASLFKYIFDRPNFCTIFCQSLRSTAISERFLENLSNTLHFSACEKIGIGLALL
DSEHLEFRTCGKNFCMAQIEELCANPVPMKSVEQIQNIIMYLHQAEGLYPLLDSFIQMLS
LVHLERGASFVLAPLLSDELRKANLLGDLDLFCESRENDFDAILAEMEKERNVDNIMMEL
GYGCTVNALQCKEILCLFLPLTEATISRLLGTVARTQAGLGDNQNTFVESLSALGSNSLS
ELPLLSSWNIEILIDSVKQLAPGTNWIGVIEKLDHEGFYVPNYDAFSFLMAAYRHACPDQ
FPLHAICGSVWKNVQGQLSFLKYAVSAPPEIFTFAHSARQLAYVDAVYGHKFQLGHANHA
WLCLDLLSVLCQLAERGHGSSVQSMLEYPLKHYPEILLLGLAHINTAYNVLQYEVSSIAF
PLIVGNSMGNGMILHLWHVNPDLVLRGFVDVHIIDPNNMTRILDICKELKILSQVLELIP
SPFSIRLAALASRHELVDLEKWLPDNLTTYKDIFFEECLKFLREIQFGAAQVSSSSFHHS
GAIMDLYSETSSTFLKVLHAHTGLVTSSQLSEEMERLHVTIMRANPKFQSCGATDSSISD
RYAADIEAESNSYFLQMYSCQLTVDAVVLKLSQFKESSEKREQLIYECMIANLFEECKFF
PKYPERQLRIAAVLFGSVISHQLVTHLSLGIALRYVLDAMRKPPDAKMFVFGTKALEQFA
DRLVEWPQYCNHILQISHLRNTHPDLVAFVEQTLARVSSGHLESDGGNNSDDQHHGSTQL
TSVNMEMSASSLQSLGASSIQSGQPGQPSSLPLQHRLQSSLDDRHKASVTLSNSTKPLVA
PAGEPLVASSGDATSIDKSLNSINAPATVSSSPGSIRPLRGITSTRFGSAMNIETLVAAS
ERRETPIEAPALEIQDKISFIINNISAANVEAKAKEFTEIFKEQYYPWFAQYMVMKRASI
EPNFHDLYLKFLDKVTSKALNKEIVQATYENCRVLLGSELIKSSSEERSLLKNLGSWLGK
FTIGRNQVLKAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCRNSIAYQPPNPWTMGIL
GLLAEIYVLPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLENRPRQVEGNPDFSNKDIGA
SHPPMISEVKSAIVSTPNKVELPVEVASPHTGGHTHLLSQYAAPFHLPTGTLMEDEKLVA
LRLSDQLPSAQGLLQATPSQLPFSVSQPTTLIPNIGTHVIINQKISALGLHLHFQRVTPI
AMDRAIKEVLSGMVQRSVNIASQTTKELVLKDYAMESDEALIYNAAHAMVSNLAGSLAHV
TCKEPLRASLARQLGNLLQGLTISNERLEQAVQLVTNDNLDKACAEMERAAADMAVQTID
KELEIRLSLRRKHREGIGSTFFDGSMYTQGSMAVLPEALRPKPGHLSLSQQQVYEGFVQL
PRQNQSNEGSNMLPADSAPPGGAGQSVSHGSALVQLDPTIYSSSPGNSGLMAVSQSLDFV
TEDLESTSVQLLSASSTHMGMGDGVIKHISENDSVVASFPSTASASDLHSVEPSDAVKEL
VTASQSFPSTVASERLGISISESLVTRDALDKYQIVAEKLETLVANGASESELQGLVAEV
PEIIHRCASRDEAALAVAQKVFKGLYADASNSSNVAAYLAILVAIRDLCKLVVKELTSWV
IYSDEERKFNKDIIISLIRSELLNLAEYNVHMAKLVDGGRNKAATEFAFSLLQTLVIEER
GVISELPNLVDTMAKIASKPGSPESLQQLIEIVKSPVANMDALSVNSLGKEDKTRQSRDK
KAPIHSAATREEHNNGEPVEQDPTGFREQVSKLFVEWYRICELPGTNDAACAHYVLQLHQ
NGLLKGEHISDRFFHLLMEISFSHCLSSEAIITGPLQSHQQVHSMSFFAIDIFSNLVFSI
LKYSPVDQGFNKFNLISKILAVTVRFIQKDAEEKKTSFNPRPYFRFFINWLSELGSPDPV
FDGANFQVLITFANAFHALQPLKIPAFSFAWLELVSHRSFMPKLLTGNPSKGWPHLHRLL
VDLFQFMEPFLRNAILGEPVHFLYRGTLRVLLVLLHDFPEFLCGYHFTFCDVIPPSCIQM
RNIILSAFPRNMRLPDPSTPNLKIDLLVEINQSPLILSDVDASLKVKQMKTDVDEYLKMG
QQGSSFLSGMKQRLLLLPIDAARAGTRYNIPLINSLVLYVGMQAMQQLKARTPPHVQPMA
SSPLAGFLVSAALDIFQTLLAELDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAES
NQEIIPEQITRVLLERLIVSRPHPWGLLITFIELIKNPRYNFWNRTFISCAPEIEKLFES
VSRSCGGANPLDESTVSGGFSENMH
NT seq
7278 nt
NT seq
+upstream
nt +downstream
nt
atgacgcattcctctgccgccttcgcgaaccagattcggttcttgcttcagagcttgaac
gaagaaaacgctgaccatgttttcgaggagctccgtgagtttgttgattatggaattgaa
ggtagtgtgttactacttgaaacctgcttagattatctgagtagggcagagttgaagaat
acacaggtggaagcaatttgtgcttcattattcaagtacatctttgatagaccgaatttc
tgcacgatattttgccagtcactaagaagtacagcaatcagtgaaagatttcttgaaaat
ctctctaataccctacacttttcagcttgtgaaaaaattggcattggtctggctcttttg
gattctgaacatcttgaattcagaacgtgtgggaagaatttctgcatggctcagattgag
gaattgtgtgccaatcctgttcccatgaaatctgttgagcaaattcagaatatcattatg
tacctccatcaggctgagggcctttacccgcttttagattcctttatacagatgttatcc
ttagttcatttggaaaggggtgcctcctttgttttagctccattgctttcagatgaattg
cgcaaggcaaacttattgggagatttggatttgttctgtgaaagcagggaaaatgatttt
gatgctattctagcagaaatggagaaggaaagaaatgtggacaacattatgatggaactg
ggttatggatgcactgttaatgctttgcagtgcaaagagattttatgccttttcttacca
ctgactgaagccaccatttctagattactcggcacagttgcacgcacccaagctggtctc
ggggacaatcagaacacatttgttgaatccctctcggcccttggtagcaacagtttgtcc
gagctgcccttattgagctcctggaatattgaaatcctcatagattcagtgaagcaactt
gctccagggaccaactggataggtgttattgaaaagctagaccacgaaggattctatgtg
ccaaattatgatgcattctcttttttgatggctgcttatagacatgcatgtccggatcaa
tttccactgcatgctatttgtggatctgtttggaagaatgttcaaggccagctatctttt
cttaaatatgctgtatcagcaccaccagaaatatttacgtttgcacattctgcaagacaa
ctggcatatgttgatgctgtgtatggccataaattccaacttgggcatgcaaatcatgca
tggttatgtcttgaccttttgagtgtgttgtgtcaactggctgaaagaggtcatggtagt
tctgtccaatcaatgcttgagtatcctctaaaacactatcctgaaatcctgcttcttgga
cttgcgcatattaatactgcatataatgtcctccaatatgaagtgtcttccattgctttc
cccttgattgttgggaattccatgggaaatggtatgattcttcacctctggcatgttaat
cctgatcttgtactgcggggatttgtagatgttcacatcattgatccaaacaacatgact
agaattttggatatctgcaaggagctaaagattctatcacaagtattggaattaattcct
tctcctttcagtatcagacttgctgcccttgcttctcgacacgaacttgtggaccttgag
aagtggttgcctgataatttaaccacatacaaagatattttctttgaggagtgccttaag
ttcttaagggagattcaatttggtgcagcacaagtttcttccagttctttccatcattct
ggtgccatcatggatctttattcagagacaagttctaccttcttgaaggtccttcatgct
catactggcttggttacctctagccagctttctgaagaaatggaaaggctgcatgtaaca
attatgcgtgctaatcctaaatttcagagctgtggggctacggattcatcaatctctgat
cgatatgcagcggatattgaggcagaatcaaactcctacttccttcaaatgtattcttgc
cagctgactgttgatgcagttgttttaaagctttctcaattcaaggagtcttctgagaaa
agggaacaattaatttatgaatgcatgattgcaaatctctttgaagaatgcaaattcttc
cccaagtatcctgagaggcagctcagaattgctgcagttctttttggttctgtgatcagc
catcaacttgttactcatctttcacttgggatcgccctacgctatgtgttggatgcaatg
cgtaaacctccagatgcaaaaatgtttgtatttggaaccaaagccttggagcagtttgca
gatcgtttagtggaatggccacagtattgcaatcatatcttacaaatatctcatctacgt
aatactcatccagatcttgttgcttttgttgaacaaactcttgcaagggtttcatcaggg
catttggaatcagatggaggcaacaatagtgatgatcaacatcatggttctacacaactt
acctctgtgaatatggagatgtctgcatcatcattacaatcacttggagctagcagcata
cagtctgggcagcctgggcagccttcttcacttccacttcaacatagacttcaaagttct
cttgatgataggcataaagcatctgtaactttatctaactccacaaaaccacttgtagct
cctgctggggagcctttggttgcttcctcgggtgatgcaactagtattgacaagtctctg
aattcaattaatgctccagccactgtgtcttcatctcctggatctatccgtcctctccga
gggattacttctactaggtttggctctgctatgaacattgaaacgcttgtggctgcttca
gagagaagagaaactcccatagaggccccagcattagagattcaggacaaaatatcattt
ataattaataatatttcagctgcaaatgttgaggctaaggcaaaagaatttactgaaatt
tttaaagagcagtactatccttggtttgcgcagtatatggtgatgaaaagagcaagcatt
gagccgaattttcatgatttgtacttgaagttcctagacaaagttacttcaaaggccttg
aataaggagatagtccaagccacttatgagaactgcagagttcttttgggatcagagctt
ataaaatcaagttcagaagagcgttcactgctaaagaatttgggtagctggcttgggaaa
tttacaattggtaggaaccaagttctgaaggcccgtgagatagatcccaaatcattgatc
atagaggcatatgagaaggggttgatgattgctgtaattccatttacctccaagatccta
gaaccttgtcggaacagtatagcatatcaacctcctaatccctggaccatgggtattctt
ggattacttgctgagatctatgtactgccaaatttgaaaatgaacctaaagtttgacatc
gaggtcctgttcaagaaccttggtgtggatatgaaagacataacaccaacttctctcctt
gaaaaccgtccaagacaagttgaagggaatcctgatttctctaacaaggatattggggcg
tcccatccaccaatgatttctgaagttaaatctgcaatagtatctacgccaaataaagtt
gagttacctgttgaggttgccagtcctcacactggtgggcacacacatttgttatctcag
tatgctgctccttttcatcttcctactggaacattgatggaggatgaaaagctagtagct
ctacgcttgtctgatcagctaccttctgctcaaggactgttacaagccaccccatcacaa
ttaccgttttctgttagtcagcctactaccctaatacctaatattggaactcatgttatc
atcaaccagaagattagtgctttgggcttgcacttgcattttcagagagttactccaatt
gccatggatagagctatcaaagaagtattgagtggtatggttcagcggagtgttaatata
gcttctcaaacgacaaaggagcttgttctaaaggactatgccatggagtcagatgaggca
ctcatatataatgcagcacatgcgatggtatcaaatctggcaggaagtttagctcatgta
acatgcaaggaaccactacgggcttcattggcaaggcaactggggaatttgcttcagggt
ttgactatctccaatgaacgtctagaacaagctgtacaacttgttaccaatgataacctt
gataaggcctgtgcagaaatggaacgagctgcagcggatatggctgtacaaacaattgac
aaggaactagagatacgactttctttaagaaggaagcacagagaaggtattggttccact
ttttttgatggaagcatgtatacacaaggttctatggctgttctaccggaggccctgcgc
cctaaacctggccacttatccctttctcagcagcaggtttatgagggctttgttcagctt
cctaggcaaaatcaatctaatgaaggctcaaacatgttgcctgctgattcagctccacct
ggtggtgctggccagtctgtttcacatggttcagcgttagtacaacttgaccccactatt
tactcatctagccctggaaactcagggctcatggcagtttctcagtccttggatttcgtc
actgaggatctggagtctacttcagttcagctccttagtgcttcctcaactcacatggga
atgggggatggtgttatcaagcacatttccgaaaatgattctgttgttgcttcatttcct
tcaactgcttcagcctctgatttgcattctgtggaaccatccgatgctgtgaaagaattg
gtaactgcttcacaatcatttccttcaactgttgcctccgagcgccttggaattagtatc
tcagaatctttggtcacaagggatgcattggataagtatcaaattgttgcagaaaagctg
gaaactttagtagctaatggtgctagtgaatcagagcttcagggccttgttgctgaagtt
cctgaaattatacaccgatgtgctagtcgagatgaggctgctttggctgtggctcaaaag
gtttttaagggtctgtatgccgatgcatcaaacagttctaatgttgctgcttatcttgca
attctggttgccattcgtgatctttgcaagcttgttgttaaggagctcactagttgggtg
atttactcagatgaggagcgcaaattcaacaaagatattattattagccttattcgcagt
gaattgctgaaccttgctgagtataatgttcatatggcaaaacttgttgatggaggaagg
aataaagctgcaacagagtttgccttttctcttctccaaactttggtgattgaagaacgt
ggagtcatttcagaacttcccaatcttgttgatacaatggcaaagattgcgagtaagcct
ggatctcctgagtcattgcaacaattgattgagattgtcaagagtcctgttgctaatatg
gatgctctatctgttaattctcttggaaaggaggataagacaagacaatctagagacaag
aaggctcctatccactctgcagccaccagggaagaacataacaatggagaacctgtggaa
caagatcctactggttttcgtgagcaggtttccaagctgtttgtggaatggtaccgcata
tgtgaacttcctggtacaaatgatgcagcttgtgcacattacgtcttgcagttgcatcaa
aatggactgctgaaaggagaacatatatctgatcgctttttccacctgcttatggaaatt
tctttttcacattgtctttcttctgaggcaatcattactggtccactacaatcacatcag
caagtgcatagcatgtccttctttgccattgatatcttttcaaatcttgtgttttcaatc
ctgaagtattctcccgtggaccagggattcaataaattcaatctcatttccaagattctg
gcagtaactgtgagatttattcaaaaagatgctgaggagaagaaaacatcttttaatcca
agaccgtatttcagatttttcattaattggctatcagaacttggttcccctgatcctgtc
ttcgatggtgcaaactttcaggttttgataaccttcgctaatgcatttcatgctttgcaa
cccctcaaaattcctgcattcagctttgcatggcttgagctggtgagtcacaggagtttc
atgccgaaattgctaacaggaaacccttcaaagggttggcctcatcttcatcggttgttg
gtggacttgttccaattcatggagccattcttgagaaatgccatactaggagagccggtt
cattttctgtatagaggcacacttagggtgctgttagtgctacttcatgatttcccggag
tttctatgtggctatcattttaccttctgtgatgtgatccctccaagctgcatacagatg
cgaaacattatccttagtgcatttccccgaaatatgaggcttccagatccatctactccc
aatttaaagatagatttgctggtggagatcaatcagtccccacttattctctcagatgtt
gatgcgtctcttaaggtgaagcagatgaagaccgatgtagatgagtatctcaagatgggg
caacaggggtcgtcatttctcagtggaatgaagcaaagactgctgcttctgccaattgat
gctgctcgcgctggaacccgttataatatacccttgatcaattcccttgtactttatgtt
ggaatgcaggctatgcagcagctgaaagcaagaacaccacctcatgtgcagccaatggcc
agcagcccattggctggcttcttggtgagtgctgccttggatatttttcagactctacta
gcagaactggacactgaaggacgctacctctttctgaatgcggttgctaaccaactacgt
tatccaaatacccatacacactacttctccttcattcttctttacttgtttgcggaatca
aaccaggaaatcattccagagcagatcactagagtgttgttggaacgccttattgtcagt
cgacctcatccatggggtcttctgattaccttcattgagctcatcaagaaccctagatac
aatttttggaaccggaccttcataagctgtgcaccagagatcgagaagctctttgaatca
gtctcaagatcatgtgggggtgcaaaccccttggatgagagtaccgtctcgggtggattt
tctgaaaatatgcactga
DBGET
integrated database retrieval system
