Vitis riparia (riverbank grape): 117933246
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Entry
117933246 CDS
T07274
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117933246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117933246
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117933246
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117933246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
RNF152_C
Motif
Other DBs
NCBI-GeneID:
117933246
NCBI-ProteinID:
XP_034710521
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All DBs
Position
16:complement(10751481..10764543)
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AA seq
307 aa
AA seq
DB search
MPRGIPKRPALVVYMASHVNLFLEEFVVFFIICIQVLKEGFNGGGYEDIERDEGGVESSM
AWDLNGGFEREIGWRIMGMVGSTFKSAICIVVLLDIKVMFLLAIDKSNHKLVAKAIQGIR
DLLKQRLLLPQNEAAQAGTRYNVPLMNSLVLYVGMQTIQQLQTKSSPPLAQQMAHNGPLE
LYLMGSAMDIFQTLIAELDTEGRYLFLNAIANQLRYPNNHTHFFSFVLLYLFVEASQEII
QEQITRVLLERLIVNRSHPWGLLITFIELIKNSRYNFWSRTFTRCAPEIEKLFESVSRSC
MVSDNMH
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgccgagaggcattcccaagcgcccagccttggtggtttacatggcatcacatgtcaac
ctattcttggaagaattcgttgtcttcttcatcatctgcatccaagtcttgaaagagggg
ttcaatggtggtgggtatgaggatatagagagggatgagggtggtgttgagtcgagtatg
gcatgggatcttaatggaggctttgaaagggaaatcgggtggaggataatgggtatggtg
gggagcactttcaagagtgctatatgcattgttgttttgctcgacataaaagtgatgttc
ctactagcaattgataagtctaatcacaagcttgttgccaaagccatacaaggcatcagg
gatcttctaaagcagagattgcttctgcctcaaaatgaggcagcacaagctgggacccgg
tacaatgtgcccttgatgaactcccttgtcctttatgtgggaatgcagaccatccagcaa
ttacaaacaaaaagctcgcctccacttgcacagcagatggcccacaatggtccgctggag
ttgtatttgatgggttctgccatggacatcttccagactctgattgcggagcttgataca
gaagggcgttacctcttccttaatgccattgcaaatcagctgcgctatcccaacaaccac
acacattttttctcctttgtccttctctacttgtttgttgaggcaagccaggaaatcatc
caggagcaaattacaagagttttgctggaacgcctgattgtaaatagatcccacccatgg
ggtcttctcatcacttttatcgagctcatcaagaattcaagatacaacttttggagccga
actttcacaaggtgtgcgccggagattgagaaactgtttgaatcggtttcacgatcttgc
atggtctccgacaacatgcactga
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