Vitis riparia (riverbank grape): 117933248
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Entry
117933248 CDS
T07274
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117933248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117933248
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117933248
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117933248
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
CNOT1_HEAT
WEF-hand
Motif
Other DBs
NCBI-GeneID:
117933248
NCBI-ProteinID:
XP_034710523
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All DBs
Position
16:complement(10931448..10969372)
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AA seq
1282 aa
AA seq
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MLFSSLISSQIRFLLHGLNDSNFDSVVRELCQFIEYGYEASILLLQTCLDHMNFHGGDMN
DMQLKPDVLAAIFRYLLDKPNFSTVLCEALRSSVIGEGFLGEFCNVLQFSVSEKIGLGLA
LADSENGDVRTSGQNFCMRQIEKLCGNPASIDSHEKIQKIIMFLYQSEGLSKHVDSFMQM
LSLMEFKERPPFILAPLLSDDLHEDSFSRNLDLFYDFSENEFDSILAEMENDTSMADIMR
ELGYGCTLSTSHCKEVLSLFLPLSEVTLSRILSTIARTHAGLEDNQNSYSTFCSAIGSGA
LSDSSCLSCWNVDVLVDSIKQLAPGINWTLVMENLDHEGFYFPNEGAFSFFMSIYACACQ
DPFPLHAVCGSVWNNVDGQISFLRYAVAAPPETFTFAHSIRKLAYTDALHGQELPHGQAN
QAWLSLDLLDVLCQLAERGHAGSVRLMLEFPLKHCPEILLLGIAQINTAYNLIQREVSST
VFPMIIGNVMGSGVILHLWHSNPKLVVHGFLDFIKSDQGNMVTILDLCQELKILSSVLEQ
IPFHFSIRLAALASQKEYASLDKWLNDCLRTHKDVFFEECLKFLKEITFDAADDVSANSF
QHSGAGMNINEETSSIFWKVLQANTDQIASKQLSEELKSLHRASMHVSPRLQNVGASDSS
TSDVYTNDIEAEANSYFHQIFSGQLTIDSMIQMLARFKESSDRREQSIFECMIQNLFEEY
RFFPRYPEKQLKIAAGLFGSLIKHQLVTHLTLGIALRGVLDALRKPTDSKIFTFGTKALE
QFLDRLIEWPQYCYHILQISHLRGTHPELVAFIERALARTSSSHSESNGGNNSSTDPHSG
SAPATLENVEVPDSSWQLLGSRTTQPGQQTLSPLPAQQRHQGFLGDRHKTSASLINYGRP
ILPPTGHASNVSTSDALGSQKLVVSQSLQTVSSQTATGVSAAVSSSTGLLHPSRSIASTS
MLRQPSYNTGFGSALNIETLVAAAERRDTHIEAPTSEVQDKISFLINNIASANIEAKAKE
FTEILDEQYYPWFARYMVMKRASIEPNFHDSYLKFLDKVNSKTLNKEIVKAAYENCKVLL
RSELIKSSSEERSLLKNLGSWLGKFTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVVPFT
SKILEPCQSSLAYRPPNPWTMAILGLLVEIYALPNLKMNLKFDIEVLFKNLGVDMKEVKP
TSLLKDRVREIEGNPDFSNKDVGASQPQMVSDINPGIMSTLSQVELQPDIVNSSHPGGHL
NVMTQVCNIGFVYLVLSSCFFL
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctcgtcgctcatctccagtcagattcggttcttgcttcatggcttgaacgat
tccaacttcgattccgtggttcgcgagctctgtcagtttattgaatatggatatgaggca
agtattttgttgctccagacatgcttggatcacatgaattttcatgggggagacatgaat
gacatgcaactcaaacctgatgtactagctgcaatctttagatatttattggataagcca
aatttcagtaccgtgctttgtgaagcattaagaagctcagttattggtgaaggatttctt
ggagagttctgtaatgtgttgcagttttcagtgtctgagaaaattggccttggtcttgct
ttggcagactcagagaatggtgatgttagaacaagtgggcaaaatttctgcatgcgtcag
attgagaaattgtgtggtaatcctgcttctattgattctcatgagaaaattcagaaaatt
attatgttcctatatcagtcagagggcctttccaagcatgtagactcattcatgcaaatg
ctgtctttgatggagtttaaagaaaggccaccatttatattagctccattactttcagat
gatttacatgaggacagtttttcaaggaatttggatttgttctatgatttcagcgaaaat
gagtttgatagtattctagcagaaatggaaaatgacacaagtatggctgatattatgagg
gaacttggttatggatgcacgcttagtacttctcattgtaaagaggtcttatctcttttc
ttgcctctctctgaagtcactctctcaagaatacttagcacaattgcccgcacgcatgct
ggccttgaggataatcaaaattcgtattcaacattctgctctgctattggtagcggcgcc
ttatctgattcttcatgcttgagctgttggaatgttgatgtccttgtagattccattaag
caacttgctcctggaatcaattggactcttgtaatggaaaatctagaccatgaaggcttc
tactttcccaatgagggggccttttcttttttcatgtccatttatgcctgtgcatgtcag
gatccctttccactccatgccgtatgtgggtctgtctggaataatgttgacggccagatc
tcttttctaagatatgctgtagcagccccaccagaaacatttacctttgcacattctatt
aggaaactggcatataccgatgcactgcatggtcaggagcttccgcatgggcaggcaaac
caagcatggttatctcttgatcttttagatgtgttgtgtcaactagctgagagaggccat
gctggttcagtgcgactgatgcttgagtttcctcttaaacactgccctgaaattctactt
cttgggattgcacaaattaatactgcctataatcttatccagcgtgaggtatcttccact
gttttccccatgattattggaaatgtcatgggaagtggtgttattcttcacctttggcac
tctaatcccaaacttgtagtgcatggattcttggattttattaaaagtgatcaagggaac
atggttacaattttggatctttgccaagagctaaagattctatcatctgtgttggagcag
attccattccattttagcattcggctggctgcactagcttctcagaaagaatatgcaagt
ctcgataaatggttgaatgattgtctaagaactcataaagatgttttctttgaggagtgt
ctcaagtttttgaaggagataacctttgatgcagcagatgatgtctctgccaattcattt
caacattctggtgctggaatgaatataaatgaggagacaagttcaatcttttggaaggtc
ctccaagctaatactgatcagattgcctctaaacagctctctgaggagttgaaaagtttg
catagagcatctatgcatgttagtcctaggctgcagaatgttggggcttcagattcatcg
acatctgatgtttacacgaatgatatagaggctgaggcaaactcttatttccaccaaata
ttttctggtcagctgaccattgattcaatgattcaaatgcttgcacgtttcaaggaatct
tcagacagaagggaacaatcaatatttgagtgtatgatacaaaacctatttgaggagtac
aggttcttccctaggtatccagaaaagcagcttaagattgcggctggtctatttggttct
ctgataaagcaccagcttgtgactcatctcacgcttggtattgctcttcgtggagtgttg
gatgcattgcgcaaaccaacagattcaaaaatattcacttttggaacaaaggctttggag
cagtttctggaccggcttatagagtggccacaatattgctatcatattttgcaaatatct
catttacgtggtactcatccagagcttgttgcatttattgaacgagctcttgctaggact
tcgtctagtcactctgaatcaaatgggggcaacaattcttcaactgatccccatagtggt
tctgctccagctactttggaaaatgtggaggtgcctgattcatcatggcaacttttagga
tctaggaccacacagcctggacagcagaccttatctccactaccagcacaacaaagacat
caagggtttcttggtgacaggcataaaacatctgcatctttgattaattatgggagacca
attctacctcccactggtcatgcttcaaacgtttccacaagtgatgcacttggcagtcaa
aagttggttgtctctcagtccttgcaaacagtgtcgtcacagactgctactggtgtttct
gcagccgtgtcttcctcaactggtttacttcatccttcccgaagcattgcatcaactagc
atgcttagacaaccttcatataatacagggtttggttctgctttgaacattgaaacgctt
gttgcggcagcggagagaagagatacacatatagaggctcctacatccgaagttcaggac
aagatatcatttttgattaataatattgcgtctgcaaatattgaagctaaagcaaaggaa
ttcactgagattttagatgagcagtactatccatggtttgcccggtacatggtgatgaaa
agagcaagcattgagcccaacttccatgactcatacttgaagtttttggacaaagttaat
tcaaagacattgaataaggagattgtaaaagctgcttatgagaattgcaaggttcttttg
agatccgagcttataaaatcaagttctgaagaacgctctttgctaaaaaatctgggaagt
tggcttggaaagtttaccataggcagaaatcaagtactcagggctcgagaaatagatccc
aagtctttgataatagaggcatatgagaagggcctgatgattgctgtggtcccatttacc
tcgaagattttggaaccttgccaaagcagtcttgcctatcggcctcccaatccttggacc
atggcaattcttggtttacttgttgagatttatgcattgccaaatcttaaaatgaatctt
aagtttgacattgaggtcctgtttaagaaccttggtgtggatatgaaggaagtaaagccg
acttctcttctcaaagatcgagttcgggaaatagaaggaaaccctgatttttctaataaa
gatgttggggcatctcagccacaaatggtttctgatattaaccctggaatcatgtccaca
ttgagtcaagttgagctacagcctgatattgttaattcatctcatcccggtggccactta
aatgtaatgactcaggtttgtaacattggttttgtttacttggttctgagcagttgcttt
ttcctttaa
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integrated database retrieval system
