Veillonella rodentium: 44547418_01596
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Entry
44547418_01596 CDS
T05216
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vrm
Veillonella rodentium
Pathway
vrm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
44547418_01596 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vrm03021
]
44547418_01596 (rpoB)
03400 DNA repair and recombination proteins [BR:
vrm03400
]
44547418_01596 (rpoB)
Enzymes [BR:
vrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
44547418_01596 (rpoB)
Transcription machinery [BR:
vrm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
44547418_01596 (rpoB)
DNA repair and recombination proteins [BR:
vrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
44547418_01596 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
SNV73190
UniProt:
A0A239ZQP5
LinkDB
All DBs
Position
1:complement(1687522..1691829)
Genome browser
AA seq
1435 aa
AA seq
DB search
MVNGKQGYFKNEMDLALFDVIRAGKLRPVRCLFHAVIENGRPVCLIGVKANMFKPEQVGK
RTRYTYAKINEVIKMPHLLDIQRKSYEWFLESGLQNIFNDISPIKDNSGNLVLSFEGFSL
GEPKYDINECKNRDATYAAPLRVNIRLVNNDPENMDIKEQEVFMGDFPLMTDTGTFIING
AERVIVSQLVRSPGVYYGKEIDTMGNRLYESTVIPNRGAWIELETDASEVVSVRIDRNRK
LPATVLVRALGWDTNESILDLFWNGETGEDGLPVYDERIVRTLEKDTTQSADEALVEIYK
KLRPGEPPTVESARNLFDNLFFDARRYDLARVGRYKLNKKLGWRQRMLGQTLAQPIVDTE
TGEIILDAGVQVSEEQLGVVAESHVFDGEGFAEFYIQNSDGTSSKVICNNCNLPYEHRTV
TREDMIANISYLLNLMDGAGHTDDIDHLGNRRLRCVGELLQNQFRIGLTRMERVVRERMT
IQEIESITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSR
ERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEFGFIEAPYRRVEKIYGK
GKEADTVVKVRVSDSVVYMTADEEEGMTIAQANSPIDADGYFMEDHVACRRGHDVLEVTP
DKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANMQRQAVPLLRAQAPLVGTGMEYT
AATDSGVCVLARESGKVVRCWGNEIHVLRDSDGRVDTYRLNKFLRSNQSTCFNQKPIVNR
GDHVVKGQVLADGPATDGGELALGYNVLVAFMPWEGYNYEDAILLSEELCKEDIYTSIHI
EEYECDARDTKLGAEEITRELPNTGDDTLRNLDEDGIICIGAEVHPGDILVGKATPKGET
ELTPEERLLRAIFGDKEREVRDTSLRVPHGESGKVVDVKVFTRENGDELQPGVNKLVRVY
IAQKRKIHEGDKMAGRHGNKGVVSRVMRKEDMPFLPDGTPVQIVLNPLGVPSRMNIGQVL
ETHLGWAVQGLGMKIKETDLHIQNVLKEARTDSSYWDEIEAVRDLYGEIEALEAKVTEDV
TVDHFDENEKIIDLKAKILKHIEKAAQKKFKVMGGEARYQELKALEAKYNALHMEYFDSE
EEAAEMDPALVEELAAIDKVKNTLNDIESAEAKRVEIRKALEGLGYDYEKYGMPKPDVAG
IHIATPVFDGAHEKDVFETLAIAGRPDDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLV
DDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVV
GRVKAYEKIVKGENIPEPGVPESFKVLLKELQSIGLDVKILNEDQEEVVMKELDDEDEAV
ETGIEDVMDGSAVETDEVTVVEPEAEEEAPADNGGEDDILSQLAYPMDQSSDDED
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
ttggttaacgggaagcaaggttattttaaaaatgaaatggaccttgctttatttgacgtt
attcgagcaggaaaactgagacctgtaagatgtctttttcatgccgttatagaaaatggt
agaccggtgtgtttgataggggtgaaagcaaatatgttcaaacctgaacaggtaggcaaa
aggactcgttatacatatgcaaaaattaacgaagttatcaagatgccgcatttattggac
attcagcgtaaatcgtatgaatggttcttggagagtggtttacaaaatattttcaacgat
atttctccgattaaagacaattcaggtaatctagtactttcttttgaagggttcagcttg
ggtgaacctaagtatgatattaatgaatgtaaaaatcgtgacgctacatatgcagcgcca
cttcgcgtaaatattcgcttggtaaataatgatccggaaaatatggacatcaaggaacaa
gaagtatttatgggcgattttccgttgatgactgatacgggtactttcatcatcaatggt
gcggaacgcgttatcgtatctcaattggtacgttcccctggggtatactatggtaaagaa
atcgataccatgggtaatcgattgtatgagtccaccgttatccctaatcgcggtgcgtgg
atagaacttgaaacagatgcgagtgaagtggtgtctgtccgtattgaccgaaaccgtaaa
ttaccggcaacggtattggttcgtgcattaggctgggatactaatgaaagtatcctcgat
ctattctggaacggcgagaccggtgaggacggattgccggtatatgatgaacgcatcgtt
cgcacactggaaaaagacacgactcaatctgctgatgaagcattggttgaaatttataag
aaattacgtcccggcgaacctccaactgtggaatccgctcgtaatttgttcgataattta
ttttttgatgcccgccgttatgatttggcgcgcgtaggccgttataaattaaataaaaaa
ctcggctggcgtcaacgtatgttgggtcaaacattggcgcaacctatcgtagatactgag
acgggtgaaattattctcgacgcaggcgtgcaggtttccgaggaacaattgggtgtagtg
gctgaaagccacgtgttcgacggtgaaggctttgcagagttctatattcaaaattctgac
ggcacgtcttccaaggtgatctgcaataactgcaatttgccatatgaacatcgcacggtt
acaagagaagatatgattgctaatatttcgtatttgctcaatcttatggatggtgcgggt
catactgatgatatcgaccatttggggaatcgtcgccttcgttgcgtaggtgaattgttg
caaaaccaattccgtatcggtttaacccgtatggagcgcgttgttcgtgagcgcatgacg
attcaggaaattgaatcgattacgccgcaagcgttgatcaatattcgtcctgtagtggcg
gcaatcaaggaattcttcggttcttcccagttgtcccagttcatggaccaaacaaatcca
ttggcggagttgactcacaaacgtcgtttatccgctctcggccctggcggtttgtctcgt
gaacgtgccggtttcgaagttcgtgacgtgcatcattctcactacggccgtatgtgtccg
attgaaacgccggaaggtccgaatatcggcttgatcaactctttgtccaactatgcaaag
gtaaatgaattcggctttattgaagcgccatatcgtcgcgttgaaaaaatttacggtaaa
ggtaaagaagccgataccgttgttaaagtgcgcgtatctgacagcgttgtatacatgacg
gctgatgaagaggaaggtatgactatcgctcaggcgaactcgcctattgatgcggacggt
tacttcatggaggatcatgttgcctgccgtcgcggtcatgatgtattggaagttacacct
gataaggtcgactatatggacgttagtccgaaagaagttgtatctatcggtacagctatg
attcccttccttgaaaatgacgatgctaaccgtgccttgatgggtgcgaacatgcaacgt
caggcggtgccactcttgcgggctcaagcccctcttgtcggtacaggcatggaatataca
gccgcaactgactccggtgtctgcgtattggcgcgcgaatccggtaaagtcgtacgttgc
tggggtaatgaaattcacgttcttcgcgatagcgacggccgtgttgatacataccgtttg
aataaattccttcgttccaaccaatccacatgctttaaccagaaaccgatcgtcaatcga
ggtgaccacgttgtaaaaggccaggtgttggctgacggccctgctaccgacggcggtgaa
ttggcattgggctataacgttcttgtagcgtttatgccttgggaaggttataactacgaa
gatgctatcctgctcagtgaagaactttgcaaggaagatatttatacatccattcatatt
gaagaatacgaatgtgatgcgcgtgacaccaaattaggtgccgaagaaattacgcgtgaa
ctgcctaatacaggtgatgatacgcttagaaatctcgacgaagacggtattatctgcatc
ggtgcagaggtacatccgggggatatcctcgtaggtaaagcaacaccgaagggtgaaact
gaacttacgccggaagaacgcttgctacgtgcaatctttggtgataaagaacgcgaagta
cgcgatacatccctgcgcgtgcctcatggcgaatccggtaaagtagtagacgttaaggtt
ttcactcgtgaaaacggtgatgaattacaaccgggcgtaaataaactcgtccgcgtatat
atcgctcaaaaacgtaagattcatgaaggcgataaaatggcgggtcgtcatggtaacaaa
ggtgtcgtttcccgcgttatgagaaaagaggatatgccgttccttcctgacggtacaccg
gtacaaatcgtgttgaatccattgggcgtaccgtcccgtatgaatatcgggcaggttctt
gaaactcatttgggctgggccgttcaaggtctaggtatgaagattaaagaaacggatctt
catattcagaatgtgttgaaagaagcgcgtaccgacagctcttattgggatgaaatcgaa
gccgttcgcgatttatatggtgaaattgaagctttggaagcaaaggttacagaagatgta
acggtagatcatttcgatgaaaatgaaaaaatcattgatttgaaagcgaaaattcttaaa
catatagaaaaagcggcgcagaagaaattcaaagttatgggcggtgaagctcgttatcag
gagctcaaagctttggaagctaaatacaatgcacttcatatggaatatttcgactccgaa
gaagaagcggcggaaatggatccggctctcgtagaggagctggccgctatcgataaggtt
aagaatacccttaacgatattgaatccgccgaagcgaagcgcgttgaaatccgcaaagcc
ttggaaggcctcggctatgattacgaaaaatacggcatgccgaaacctgatgtagcgggt
attcatatcgctacacctgtatttgacggtgctcacgaaaaagacgtattcgaaaccttg
gcgattgcaggtcgtcctgatgacggtaaaaccgtactatatgacggtcgtaccggtgaa
ccgatggataatcgcgttacggtcggatatgtttatatgcttaaactccatcatttggtt
gatgataagattcatgctcgttccacaggtccgtactcccttgttacacaacaaccgttg
ggtggtaaagctcaattcggcggtcagcgtttcggggaaatggaagtgtgggctcttgaa
gcctatggtgcagcctatacacttcaagagttgctgaccgttaaatccgatgatgtcgta
ggccgtgtgaaagcgtacgaaaaaatcgttaaaggtgaaaacattccagaaccgggcgta
cctgagtcctttaaagtattgctcaaagaacttcaaagtatcggtcttgatgtaaaaata
ttgaatgaagatcaagaagaagtagtaatgaaagaacttgatgacgaagatgaagcggta
gaaactggtattgaagatgttatggacggcagtgctgttgaaacagatgaagtaacagtt
gtagaaccggaagcagaggaagaagcacctgccgataatggcggggaagatgatattctc
agccaactggcatatcctatggatcaatcctctgacgatgaagactga
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integrated database retrieval system
