Aliivibrio salmonicida: VSAL_I2866
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Entry
VSAL_I2866 CDS
T00782
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VSAL_I2866 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsa03021
]
VSAL_I2866 (rpoB)
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_I2866 (rpoB)
Enzymes [BR:
vsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VSAL_I2866 (rpoB)
Transcription machinery [BR:
vsa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VSAL_I2866 (rpoB)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VSAL_I2866 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
FapA
DUF7432
Motif
Other DBs
NCBI-ProteinID:
CAQ80550
UniProt:
B6ENR3
LinkDB
All DBs
Position
1:complement(3104688..3108716)
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AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFTKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRVKLRLVVYDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALRKTTEEILDLFFDKVVFEVKDQTLMME
LLPERLRGETATFDIESNGKVYVEAGRRITARHIRQLTKDEVNNIEVPVDYIVGKVASHD
YVNEDTGEIIIAANQEFSLEDLANLSQAGHKKIEVLFTNDLDHGAYISDTLRADSTVDRL
SALVEVYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIGRDNGEGAGIL
DETDIIEVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAYARCNEYGFLETPYRRVVDNIVT
EDVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIARQKGESGLHPREHIQYMDVATNQV
VSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERCVAIDSGVTAVAKR
GGMVQSVDASRIVIKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVTRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDI
TEEFQILEGGLLARVRTLLTLAGTSEVKLDAMDRKQWLEITLDDESQQNQLEQLAEQYDE
LKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMGLAAKGVGDKLNQMLKEQQELHK
FRNFLQKVYDLGETRQEVDIAALSDDEVRTLVKNLRGGLPIATPIFDGAPESSIKELLKL
VDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatacagagaaaaagcgcatccgtaaggattttggtaagcgtccacaa
gtgttggacataccatacttactatcgatccagcttgattcttttactaaatttatcgag
caagatcctgaagggcaatacggtcttgaggctgctttccgttctgtttttccaattcag
agctacaatggcaactctaagctagaatacgttagctataatctccgtgagccagaattt
gatgttaaagaatgtcaaatccgcggtgttacctattctgcacctttacgcgttaaatta
cgtttagttgtgtacgataaagatgcacctgcaggcacggtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgactgacaacggtacttttgtaatcaatggt
actgaaagggttatcgtatcccagctgcaccgcagcccaggtgtcttcttcgacagcgat
aagggtaaaacccattcatctggtaaagttctttataacgcgcgtgtaattccttaccgt
ggttcatggttagatttcgaatttgatcctaaggataacttattcgtacgtatcgaccgt
cgtcgtaaattaccagcaacgatcatcttacgtgcacttcgtaaaacaacagaagaaatc
ttagatctattcttcgataaagttgtatttgaagtgaaagaccaaacgttaatgatggaa
ttacttcctgaacgtttacgtggtgagactgcaacatttgatattgaatcgaacggcaaa
gtttatgttgaagccggtcgtcgtattactgcgcgtcatattcgtcaattgacgaaagac
gaagtaaataatatcgaagtaccagtagattatatcgtaggtaaagtggcttctcacgat
tatgtgaatgaagacactggtgagatcattatcgcggctaaccaagagtttagcttagaa
gatcttgctaatttatctcaagctggccacaaaaagattgaagtgttatttacgaatgac
cttgatcatggtgcatacatctctgacacattacgtgcagattcaactgttgaccgttta
tcggcacttgttgaagtttatcgtatgatgcgcccaggcgagccaccaacaaaagaagct
gctgaatcattatttgaaagcctattcttctctgaagatcgttatgacttatcgactgtt
ggtcgtatgaagttcaatagctcaattggtcgtgataatggtgaaggcgcaggcatcctt
gatgaaacagacatcatcgaagttatgcgtaaactgatcgatattcgtaacggtaaaggc
gaggttgatgatatcgatcaccttggtaaccgtcgtattcgttctgttggcgaaatggca
gaaaaccaattccgtgttggtttagttcgtgtagaacgtgctgttcgtgaacgtctaagt
cttggtgatcttgatgcaattatgcctcaagatcttatcaacgctaagccgatttcagct
gcagttaaagaattctttggctcttcacagctgtctcagtttatggatcagaataaccca
ttgtcagaagttacgcacaaacgtcgtatttctgctttagggcctggcggtctaactcgt
gagcgtgctggtttcgaagttcgtgatgtacacgcgactcactacggtcgcctatgtcca
atcgaaactcctgaaggaccaaacatcggtctaattaactcattatcagcgtatgctcga
tgtaatgaatatggtttcctagagactccatatcgtcgtgttgttgataatatcgtgact
gaagatgtagattacctatctgcgattgaagaaggtacatttgttattgcacaggcgaat
gccgtgttaacagaagaaggtactttcgctgatgaattaatcatcgctcgtcagaaaggt
gaatcaggcctacatccacgtgaacacatccaatatatggatgtcgcgacaaaccaagtt
gtatctgtagctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcccta
atgggtgcgaacatgcagcgtcaagctgtacctacattaagagctgataagcctttagtt
ggtactggtattgagcgttgtgtagcaatcgattcaggtgtaaccgctgttgctaaacgt
ggcggtatggttcagtcagtagatgcttctcgtatcgttatcaaagtgaacgaagaagaa
ttggtacctggcgaagctggtatcgatatctacaacttaactaaatacactcgttctaac
caaaatacgtgtatcaaccaacgtccaacagtgcttcctggtgaacctgttactcgtggt
gatgttcttgctgatggtccgtcaacggatcttggtgagcttgcacttggtcagaacatg
cgtatcgcatttatgccttggaatggttataacttcgaggattcaatccttgtatctgag
cgtgtagttcaggaagaccgtttcacgacgattcacattcaagaactatcttgtgtggct
cgtgatactaaacttggctctgaagagatcactgcagatatccctaacgtaggcgaagct
gctctgtctaaacttgatgaatcaggtattgtttatatcggtgctgaagttaagggtgga
gacatcttagttggtaaagtaacacctaaaggtgaaactcaactgactccagaagagaag
ctactacgagctatctttggtgaaaaagcatcagatgttaaagattcttctctacgtgta
ccaaactctgtttcaggtactatcattgacgtacaagtatttacgcgtgatggtgttgaa
aaagataaacgtgctctagaaatcgaacaaatgcagcttaaagaagctaagaaagacatc
actgaagaattccagattcttgaaggtggcttattagcacgtgttcgcacacttctaacg
cttgcaggtacttctgaagttaaacttgatgcgatggatcgtaagcagtggttagaaatc
acgcttgatgatgaatcacaacaaaatcaacttgagcagcttgctgagcaatatgatgaa
cttaaagctgagttcgataagaaattcgaaactaaacgtcgtaagatcactcaaggtgat
gatcttgcaccaggcgtactgaaaatcgttaaagtttacctagcggtaaaacgtcgtatt
cagcctggtgataagatggcgggtcgtcatggtaacaagggtgtaatctctaagattaac
cctgttgaagacatgccttatgatgaaaaaggtcagccagtagatatcgttctgaaccca
ctgggtgtaccttctcgtatgaacatcggtcaaattcttgaagttcatatgggtcttgct
gcgaaaggtgttggtgataaacttaaccaaatgcttaaagagcaacaagaactgcataag
ttccgtaacttcttacaaaaagtatacgatcttggtgaaactcgccaagaagtagacatc
gctgcactgtctgatgacgaagttcgtacattagttaagaacttacgcggtggtttacca
atcgcaacaccaatctttgatggtgctccagaatcatcaattaaagaactattaaaactt
gttgatctgccagaatctggtcagttgaaattgtttgatggtcgtactggtgatgcgttt
gagcgtcctgtaactgttggttacatgtatatgctaaaactaaaccacttagtcgatgac
aagatgcacgcacgttctaccggctcttacagccttgtaactcagcagccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcacttgaagcatat
ggtgctgcatatactctacaagaaatgctaacagttaagtcggatgacgtgaacggtcgt
actaagatgtataaaaacatcgtagatggcgatcatcgtatggaaccaggtatgccagaa
tcattcaacgtattgttgaaagagatccgctcacttggtatcaacatcgagttagaagac
gaagaataa
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