KEGG   Vibrio sinaloensis: MTO69_01380
Entry
MTO69_01380       CDS       T08230                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vsi  Vibrio sinaloensis
Pathway
vsi02024  Quorum sensing
vsi03018  RNA degradation
vsi05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vsi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MTO69_01380 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    MTO69_01380 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    MTO69_01380 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vsi03019]
    MTO69_01380 (hfq)
   03036 Chromosome and associated proteins [BR:vsi03036]
    MTO69_01380 (hfq)
Messenger RNA biogenesis [BR:vsi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     MTO69_01380 (hfq)
Chromosome and associated proteins [BR:vsi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    MTO69_01380 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UPQ88237
LinkDB
Position
1:286459..286722
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPQGERQQEKSED
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccattcttaaacgcattacgtcgtgaacgtatt
cctgtgtctatctaccttgtaaacggaattaaactgcaaggtcagatcgaatcatttgat
cagtttgttatcttgctgaaaaacaccgttaaccaaatggtgtacaagcacgcaatctcg
acagtggtacctgctcgtccagtgagccaccacagtggtgatcgtcctcaaggtgagcgt
cagcaagagaagtcagaagattaa

DBGET integrated database retrieval system