Vigna unguiculata (cowpea): 114167298
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Entry
114167298 CDS
T06017
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114167298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114167298
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114167298
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114167298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
114167298
NCBI-ProteinID:
XP_027908150
LinkDB
All DBs
Position
10:complement(298112..319915)
Genome browser
AA seq
2405 aa
AA seq
DB search
MTTLLHSLPSMSNFSSNQIRFLLTTLNEVNFDSVFHQLSQFSEFGTTGCILLLQTCLDHY
GYARRDTKDMQHEPILGAVIKYLLDKPNFSTVFSESMKNMEINESFLENFCNGLQLSLLE
KIIVSLALSDSENSEFRLCGKTFCMAQIEELCANPGSLSFHEQIHSIIMFLKQSEGLSKH
VDSFMQILSLMEFKATPPFVLTPLLPDEMHEADFLRNMELFHDSGENDFDAILADIQKEM
NMGDIVKELGYGCTVDVSQCKEIFSLFLPLTEHTLSKLLGAIACTHYGLEDNQNTYLNFR
AAHGYNVSELPPLNSWNIDVLIDTVKHLAPHTNWVSVIENLDHEGFFLPSEEAFSFLMSV
YKLACKEPFPLHAVCGSVWKNTEGQLSFLKYAVSAPPEMFTFAHSGRQLAYVDAINGHKI
QNGHPNHSWLCLDLLDVLCQLAEKGHASVVRSILDYPLKHCPEVLLLGMAHINTAYNLLQ
QEVSPIVFPLIVKSAVGSGMILHLWHVNPNLVFRGIIDSQNNDADSIIRIVDICQELKIL
SSVVEIIPSHYSIRLAAVASRKELLDLEKWLSGNLITYKETFFEECLKFIKDAHFGGSQN
LSGKSFHPSSGVLSLYAEATATVLKVLKSHNDLVATRQLSEELERLHISIIDSNPRLQNG
GAGDSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESSVKREKSIFECMIA
NLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLF
GSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHSDGDGASHAS
VITNHHSAQATLGHVEQLGGSTVIQPGQQHLSLQLQQRRENPLDDRHKASVGSSTDVKPL
LSSLGQSSVLPTDASNTNKLHTSVSTSSMLSSSSPGFVRPSRGPTSTRFGSALNIETLVA
AAEKREIPIEAPGSEVQDKILFIINNVSSTNIEAKAKEFTEILKEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMG
ILGLLVEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREFEGNPDFSNKDV
GASQSQMITDIKSGLVPPVNQLELPLEVTNPSNTGAHPHMLSQYAGPLHMSSGALMEDEK
VTPLGLSDQLPSAQGLLQATPSPAPFSHSQMQPQIPNIGTHVIINQKLSGFGLQMHFQRA
VPIAMDRAIKEIVTSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSL
AHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAIS
TIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSMSQQRVYEDF
VRLPWQNQSSQSSHSMSAGVAVQSANTGLPSTNGSVSGQVNPGYPVSTGYEGVSRPLEDI
TESNLAPHFSASSIHIRASDSVSQHSLEKESVASFPSAASTPELHAVDSSDVKESGTSQP
LVTSGAMERLGNSFLEPSLTTRDALDKYQIVAQKLEAMVSSDSRDAEIQGVISEVPEIIL
RCVSRDEAALAVAQKVFKGLYDNASNNIHVSAHLAILTAIRDVCKLAVKELTSWVIYSEE
ERKYNKEITIGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFSISLLQTLVIEEPKVISE
LHNLVDALAKLATKPGCPEPLPQLLEMIKNPGALSSSNAGKEDKARQSRDIKVPGLLPAN
REEFNSVDSIEPDPAGFREQVSILFKEWYRICELPGANDTASAHFILQLHQNGLLKGDDL
TDRFFRLLLELAVAHCLSTEMINSGSLQSQQLQTMSFLAIDIYAKLVFSILKGSNKPFLL
SKILAVAVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTAFANAF
HALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAEL
GDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPD
PSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQGSPFLSDLKDKMLL
APNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHTQSSANAFPLAVFSVGAALDIF
QTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQQEVIQEQITRVLLE
RLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDNM
VSGWV
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgacgactcttcttcattccttgccatccatgtccaatttttcctccaaccagattcgc
tttctcctcaccaccttgaacgaagtcaactttgactccgttttccatcaactctctcag
ttttctgaatttggaaccactggatgcattttgctgcttcaaacttgcttggatcactat
ggttatgccagaagagatacgaaagacatgcagcacgagccaattcttggggcagtcatt
aaatacctcttggacaaaccaaacttcagtacagttttttctgagtcgatgaagaatatg
gaaattaatgaaagctttttagaaaacttttgtaatggattgcagttatctttattggaa
aagattatcgtcagtcttgcgttatctgattctgagaattctgaatttaggctgtgtggc
aaaaccttttgcatggctcagatcgaggaattatgtgccaaccctggttctttgagtttc
catgagcaaattcacagtattatcatgttcctaaagcagtccgagggtctttccaagcat
gtggattcctttatgcagatattatcacttatggagttcaaagccacaccacctttcgtc
ttgactccattgcttcctgatgagatgcatgaggctgattttttaaggaatatggagttg
ttccacgactctggagaaaatgattttgatgctattttggcagacatacagaaggaaatg
aacatgggtgatattgtgaaggagctagggtatggatgtactgttgatgtctcacagtgc
aaggaaatattttcgctcttcttacctttaactgaacatacactctctaaattacttggt
gctattgcttgtacccattatgggctggaggacaaccaaaacacatacttaaattttcgt
gcggcccatggatacaatgtttctgagttgccgccattaaactcttggaatattgatgtc
ttgattgatacagtcaagcatcttgcacctcataccaattgggtaagtgttattgaaaat
cttgatcatgaagggtttttccttcctagtgaagaggcattctcttttctcatgtctgta
tataaacttgcctgtaaggaaccgtttcctctccatgctgtctgtgggtctgtctggaag
aatactgagggtcagttgtctttccttaaatatgcagtatcagcaccaccggaaatgttt
acctttgcacactctggaagacagctggcatatgttgatgcaattaatggccacaagatt
caaaatggacatccaaatcattcatggttgtgtcttgaccttttagacgttctgtgccag
ctagctgagaagggtcatgccagtgttgttcgttcaatccttgattatccccttaaacac
tgtcctgaagtcttacttcttgggatggcacatattaatactgcctacaacctcttgcag
caggaagtatctccaattgtctttcccttgattgtaaaaagtgctgtaggcagtgggatg
attctacacctttggcatgttaatcctaatttggtctttagagggattattgattctcaa
aacaatgacgcagacagtattataagaatcgtagacatctgccaggagctaaagatttta
tcatctgtggtggaaattattccttctcattatagtattaggttagcagctgttgcatca
agaaaagaattacttgaccttgagaagtggttgagtggcaacttaattacatacaaggaa
accttttttgaggagtgtctcaagttcattaaggatgcccattttggtggatcgcagaac
ctttctggcaaatcttttcatccatctagtggtgttctgagtctatatgctgaggcaacg
gctactgttttgaaggttcttaaatctcataatgacttggttgccactagacaactttcg
gaggagttggagaggctgcatatatctattatagattcaaatccaaggcttcagaatggt
ggggcaggcgattcatctacttctgatggttatgcagatgacattgaagcagaagcaaac
tcttatttccatcaaatgttctctgatcagttaaccattaatgcaatggtacaaatgcta
gctagattcaaggaatcttcagtgaagagggagaaatcaatttttgaatgcatgattgca
aacttattcgaggagtatagattttttccaaagtatcctgaaaggcaactcaaaatagct
gcagttctctttggttctgtgattaagcatcagcttgtaactcatctatccttggggatt
gcacttcgttatgttcttgatgcattgcgcaagcctgcagattcaaaaatgtttctgttt
ggaagtctggcgttggagcagtttgtggatcgtcttattgagtggcctcagtactgcaat
catattcttcaaatttctcatctgcgtagtacacattcagaaatagtggctttcattgag
caggccctcgccaggatttcctctggtcattcagacggtgatggggcaagtcatgcttct
gttattactaaccatcattctgcacaggctacattagggcatgtagagcagctcggtggc
tccaccgtcatacaacctgggcagcaacatttgtcactacagcttcaacagagacgtgaa
aatcccttggatgatcgtcataaagcttctgtgggttcatctactgatgtaaaaccactg
ttatcttctctggggcaatcttctgtactacctactgatgcttctaataccaataagtta
catacctcagtcagcacctcgtcaatgctatcttcttcttctcctggttttgttcgccct
tcccgtggacctacttctaccaggtttggatctgccttgaacattgaaactttggttgct
gctgctgagaaaagagaaattcctatagaggctccagggtcagaggttcaggacaagata
ttatttattattaataatgtttcttctactaatattgaagctaaagcaaaggagttcact
gaaattttgaaagaacagtactatccttggtttgcacagtatatggttatgaaaagagca
agcattgagccaaatttccatgacctgtacctgaaattcctggataaagttaattcaaag
gctttgaacaaagagattgttcaggcaacttatgaaaattgcaaggttcttttaggatcc
gagctcataaaatcaagttcagaggaacgttctttgcttaaaaatttggggagctggctt
ggaaaattaacaattggccggaatcaggttttgagggctcgagaaatagacccaaagtct
ttgattatggaggcatatgagaaggggctaatgattgctgttattccatttacgtcaaag
gtccttgaaccatgccaaagcagtcttgcataccaacctcctaatccttggactatgggc
attttgggattgcttgttgagatttattcaatgccaaacttgaaaatgaacctaaagttt
gacatagaggttttattcaaaaatcttggtgttgatatgaaggatgtcaccccaacttcc
ctcctgaaagatcgaaaaagagaatttgaaggaaatcctgatttctctaataaggatgtg
ggggcatctcaatcacaaatgattactgatataaaatctggtcttgtacctccagtaaac
caactggaattgccacttgaagtcaccaatccatcaaatacgggtgctcatccacatatg
ctgtctcagtatgctggccctcttcatatgtcctcgggtgcattgatggaagatgaaaag
gttacacctttgggattgtccgatcaacttccctctgctcaaggactgttacaagcaact
ccttccccagcaccgttttctcatagccagatgcaaccacagatacctaatattgggact
catgttattattaatcaaaagctcagtggttttggtttgcaaatgcattttcagagagcg
gtacccattgcaatggatagagctatcaaagagatagtgactagtattgtgcagcgtagt
gtttccattgcaacacaaactacaaaggagcttgttttaaaggattatgccatggaatct
gatgagacacgcatattaaatgcagcacacttaatggtagctagtcttgctgggagtttg
gctcatgttacttgcaaggagccattacgggcatccatttccggtcaactgaggacttca
cttcagaacctgaatattgccaatgaaattttggaacaggctgtgcaacttgtaaccaac
gataatcttgatctaggctgtgctgtcattgaacaggctgctactgataaggctataagc
accatcgacacagagattggtcaacaactctctttgagaaggaagcatcgagaaggtatg
ggttctacattttttgatgcaaatttgtatccacaaggttctatgggtggtgttccagag
cctcttcgcccgaagcctggccagttgtcaatgtcacaacagcgtgtctatgaggacttt
gttcggcttccttggcaaaaccagtctagccagagctcacattctatgtctgctggtgtt
gctgttcaatctgccaatactggtcttcctagtaccaatggttctgtatcaggtcaggtt
aaccctggttacccagtgagcacaggatatgaaggagtatctcgaccattagaagatata
acagagtctaatttggctccacattttagtgcttcctcaattcacattagagcatctgat
agtgtttcacagcatagtttggaaaaagagtctgttgcttcatttccttcagcagcttcc
accccggaattgcatgcagttgattcgtctgatgtgaaagaatctggaacttcacagcca
ctagttacatcaggtgctatggagcgccttggaaatagtttcttggagccttctctcact
acaagagacgccctagataagtaccagattgtcgcacaaaagttggaagctatggtcagc
agcgattccagggatgcagaaatccagggtgtcatttccgaggttcctgagatcatactt
agatgtgttagtcgagatgaggcagctttagctgtggcccaaaaggttttcaagggttta
tatgataatgcatcaaacaacatccatgtctctgctcatcttgcaatcctgactgccatt
cgagatgtttgcaaacttgctgtgaaggagcttactagttgggtaatttactcagaagaa
gaaaggaaatataacaaagaaattactattgggcttattcgtagtgaattgctaaatctt
gccgagtacaatgttcatatggcaaaacttattgatggaggaaggaacaaggctgcaacg
gaattttccatttcccttcttcaaaccctggttatcgaggaacctaaagttatttcagaa
cttcacaatcttgttgatgctctggctaagcttgctacaaagcctggatgccctgagcca
ctaccacagcttcttgaaatgatcaagaatcctggtgctctatcatctagcaatgctgga
aaggaggataaggcaagacagtcaagagacattaaggttcctggtctgctacctgctaac
agggaagagttcaacagcgtggattctatagaaccagatcctgctgggttccgggagcag
gtttccattttgtttaaagaatggtatagaatatgtgaacttcctggtgccaatgataca
gcctctgcccacttcatcttgcaattgcatcagaatgggctgcttaagggtgatgatctt
acagaccgctttttccggctattactggagcttgctgttgcgcattgcttatccactgag
atgattaattcagggtcactacaatcacaacagctgcagacaatgtcatttcttgcaatt
gatatttacgcaaagcttgtcttctcaatcttgaagggatcaaacaaaccctttcttcta
tccaagattctggcagttgctgtccgattcattataaaagatgcagaggagaagaaggca
tcttttaatccaagaccacttttcagattattcatcaactggcttctagatcttggttca
cttgagcctgttactgatggtgcaaatcttcagattttgactgcttttgccaatgcattt
catgcattgcagcccctcaaagttcctgcgttcagttttgcatggcttgaactgataagt
cacaggagcttcatgcctaaaatgttgactggtaatggtcaaaaaggttggccttatatc
caaaggttgcttgtagacctgttccaatttatggagccttttctgaggcatgctgaactt
ggagacccggtacgtgtcctctacaaagggacactaagggtgctcttggtgctacttcat
gacttccccgagtttctatgtgattatcactttaccttttgtgatgttattcctccaagc
tgcattcagatgaggaatatcattttaagtgcatttccacggagtatgaggctgcccgat
ccatctactcctaatttgaagatcgatttactccaggaaattacccaatcaccccgcatt
ctttcagaggttgatgctgcacttaaagcaaagcagatgaaggctgatgtagatgaatac
cttaagacaaggcaacagggttctccatttttgtctgatctgaaggataagatgcttctc
gcacccaatgaagctgcctctgctgggactcgatacaatgtgcccttaatcaactcactt
gtgctatatgttggaatgcaggcaatccatcagcttcagggacgaactccccatacacaa
tcttcagcaaatgctttccccttagccgtattttctgttggtgctgcattggatattttt
cagacacttattgtggacttggacactgaaggccgttacctcttcctaaatgccattgcc
aaccaattacgttatcctaataccaacacacactacttttccttcatccttctttacttg
tttgctgaatcaaaccagcaggaagttatccaagaacaaattaccagagtcttgttggaa
cgcctaattgttaaccgtcctcatccctggggtctcctcattacctttattgaactcatc
aagaatcctaggtacaacttctggaaccggagtttcatcagatgtgccccggagattgaa
aaactttttgaatctgtgtcaagatcttgtgggggtccaaaaccagtggatgataacatg
gtctccggttgggtctga
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