Vigna unguiculata (cowpea): 114169353
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Entry
114169353 CDS
T06017
Name
(RefSeq) pre-mRNA-processing protein 40C isoform X1
KO
K12824
transcription elongation regulator 1
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114169353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114169353
Spliceosome [BR:
vun03041
]
Complex A
U1 snRNP components
U1 related factors
114169353
Complex B
114169353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Glyco_hyd_101C
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
114169353
NCBI-ProteinID:
XP_027910289
LinkDB
All DBs
Position
11:39083742..39095634
Genome browser
AA seq
977 aa
AA seq
DB search
MASPAWLPQEAKPPVSGETSLPMASPTPNSAHATPSTAPAPASAPPFPHGVLQNANASGS
SQQSSTHNVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNVPQSGAAFSSTQQHTQSSGKI
SESVAQDVTKLSSTSSNPHSVPAHTSTSIMPPSDPNYRPTTSWMPTAMSFPLHPVMPTPG
NPGPPGLTSTSIISINPAVPSTGTDSSSAALPRPNMPISAIASDPTTPLKGLPYPSMPSM
AAPPQGLWLQAPQMSGVFRPPYLQYPAPFPGPFPFPARGVTLPAVPIPDSQPPGVTPVSG
GGGTSTPASSNHIRGTTALQTEVISGPADDKKKLNAVVTQNEDAANNDQLEAWTAHKTEA
GIIYYYNALTGESTYDKPAGFMGEPHQVSAQPTPVSMMDLPGTDWLLVSTSDGKKYYYNN
RTKTSCWQIPNEVAELKKKQDGDVTKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDA
AALKPSNLQSPSSALDLIKKKLQDSGTPVTSSSIPAPSVQTGSESNGSKAVESTSKGMQA
DNSKDKQKDTNGAANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPK
IVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINYN
TDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKTQAMRAAAAASFKSMLKE
RGDISFSSRWSRVKESLRDDPRYKSVRHEDREGLFNEYLSELKAAEHAAERETKAKREEQ
DKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLE
KDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASHENDDGKTVL
NSWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMVRRQKASHSHDSREDKHTDAKGRNS
LESSKYPLESGRSHDRR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgccggcgtggttgccgcaggaggcgaagccacctgtgtccggagaaacgtct
cttcctatggcttctcctacccctaattccgctcatgcaactccttctaccgctccggca
ccggcttcggcacctccatttcctcacggcgttcttcagaatgctaatgcttcgggaagc
tcgcagcagtcatcgacacataatgtgataaaatccaattcaacagtaaaccctgtagtt
tttcaacctccagttcctggtgtgtcgtcgcatgctgctctttcgttttcatataatgtc
ccccagagtggtgctgctttttctagcacccagcagcatactcaatctagtggtaaaatc
tccgaatctgttgcacaggatgttactaaattatcatctacgtcaagtaatccacattct
gtccctgctcatacttctacatcgataatgcctccctctgatcctaattatcgtccaact
acttcgtggatgcccactgccatgtcttttcctttgcatcctgtaatgcctactccagga
aatcctggccctcctggattaacatcaacttctataatatccatcaatcctgctgttcca
tctacaggaacagattcttcctcagcggcattaccgagaccaaacatgccaatttcagcc
attgcatcggatcctactacccctctaaaaggtttaccctatccatccatgccttcaatg
gctgctccccctcagggactttggttacaggccccacagatgagtggtgtctttaggccc
ccatatttacaataccctgctccttttcctggcccctttccatttccagcacgtggtgtt
actctccctgctgttccaatacctgattctcaacctcctggtgttacacctgtgagtggt
ggcggtggcacttctacacctgcttccagcaatcatataaggggaacaactgctttgcaa
acagaagttatttcagggccagctgatgataaaaagaaattaaatgctgttgtcacccag
aatgaggatgctgctaataatgatcaattagaggcctggactgcccacaagactgaagca
ggaattatatactattataatgccttgactggagaatcaacatatgataaacctgctgga
tttatgggggagcctcaccaagtttctgctcagcccactccagtttcaatgatggatttg
cctggtactgattggctgttggtctctaccagtgatggaaaaaaatattactacaacaat
cgaaccaagactagctgctggcaaattccaaacgaggtggctgaattgaagaagaaacaa
gatggtgatgttacaaaagatcagttaatgtcagttccaaatactaatgtcttgtctgat
agagggtctggaatggttactctgaatgctcctgctattaatactggtggtcgtgatgct
gcagctcttaaaccctccaatctacagagcccatcatcggctttggatttgatcaagaag
aaattgcaggattcaggaacacctgttacttcctcttctattcctgcgccatcagtacaa
acaggatctgaatcaaatggttcaaaagcagttgaatctacctctaagggcatgcaagca
gataatagcaaagataaacaaaaagatactaatggtgctgctaatgtttctgatacatct
tcagattctgaagatgaagacagtgggccttcaaaggaggagtgcatcattcaattcaag
gagatgctcaaggagcgaggagtggcaccattctcaaaatgggagaaagaattgccaaag
atagtatttgatccacgttttaaggccattccaagttattctgcaaggagatccttgttt
gagcattatgttaaaactcgtgctgaagaagaacgcaaagaaaagcgtgctgcacagaag
gctgcaattgaaggatttaaacaattactggatgaagcctcagaggatattaactacaat
actgattatcaaacttttcggaagaaatggggaaatgatccacggtttgaggcattggac
cgcaaggaacaagagcatttattgaatgaaagagtgcttcctttgaagaaagctgctgaa
gaaaagacacaagcaatgcgtgcagctgctgcagccagttttaagtcaatgcttaaagag
cgaggagatatatctttcagctcacgttggtccagggttaaagaaagtttaagggatgac
ccaagatataaatctgtgaggcatgaggatagggaaggtttgttcaatgagtatttatct
gaactgaaagctgcagaacatgcggcagaaagagagaccaaagctaaaagggaggagcag
gacaagcttagggaaagagaacgagagctgcgcaaaaggaaggaaagagaagaacaggaa
atggagagggtgcgactaaaaattcgaagaaaggaggcagttacttcttttcaagcttta
ctggtggagacaatcaaagatcctctggcatcatggacggaatcgaaacctaaattagaa
aaggatcctcaaggacgcgcaactaatcctgaacttgattcttctgatacggaaaagttg
tttcgggaacacgtgaagatgcttcaggagcgatgtgctcacgagtttagagttctctta
gctgaagtattgacctctgatgctgcatctcatgaaaatgacgatggaaaaacagtgcta
aattcttggtccacagctaagcgagttctaaaatctgatccaagatataacaaagttcca
agaaaagaaagagaagcattgtggcggcggtatgcagaagatatggtgcggcgtcaaaag
gcatctcattctcatgattccagggaagataaacatactgatgctaaaggtagaaattct
ctagaatcttccaaatatccattggaatctgggagatcgcacgaccgaagataa
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