KEGG   Vitis vinifera (wine grape): 100253705
Entry
100253705         CDS       T01084                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100253705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100253705
Spliceosome [BR:vvi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    100253705
 Complex B
    100253705
 Complex C
   U2 SnRNP specific factors
    100253705
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd ATP-synt_F6 Desulfoferrod_N
Other DBs
NCBI-GeneID: 100253705
NCBI-ProteinID: XP_002268036
UniProt: E0CVI1 A0ABY9DKS7
LinkDB
Position
16:join(26257415..26257588,26259929..26260042,26260162..26260266,26260359..26260501,26260649..26260745,26266891..26267055,26268426..26268497,26269502..26269660,26269865..26269942,26270606..26270734,26271094..26271240,26271949..26272095)
AA seq 509 aa
MSSTLLEVTRAGHEEIERLERLIVKDLQNEPASSKDRLFQSHRVRNMIDTITITTEKLID
IYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHQAARVVDANEEYEELL
KEELRIEFRGEEAFGRYLDLHELYNEYINSKFGEHIEYSAYVEVFSEPQKIPRKLKLTRQ
YREYLENLLEYLIYFFERTEPLQDLDRIFTKLATDFEEQWANGMVEGWENESQENGNVPT
QHAAIDLDYYSTVEEVMEVGPEMLKEALAALGLKTGGTVQQRAERLFLTKHTPLEQLDQK
HFAKGSRRSEQNGTPAAPKEADSSKEIALLEAKLRKICELLYETIVRTKENIEKKQALTY
EEMEAEREEEEVQADTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG
NHSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIKEAKVLWERIQERQGLNKWR
PDLEEEYEDKEGNIYNKKTYTDLQRQGLI
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgtcgactctactggaagttactcgagcgggtcacgaagaaatcgagcggcttgag
cggctcatagtgaaggatctgcagaacgagccggcttcgagcaaggaccgcctatttcag
agccacagagttcgaaatatgatcgacaccatcaccattacgacagagaaactcattgat
atttatgaagacaaagataatgcaaggaaggatgagattgcagcgcttgggggtcagaca
gcaaccggaacaaacgtgtttagtgcattttatgacagattgaaagagattcgtgagtac
catagaaaacatcaagctgcacgtgttgttgatgctaatgaggagtacgaggagctactc
aaagaggaactgcgaattgagtttcgtggagaggaagcctttggacgttatttggacctg
catgaattgtacaatgaatatattaattcaaaatttggggagcacattgagtactctgct
tatgttgaagtcttttcagaaccacaaaagatccctcgtaagttgaagttgacaaggcaa
tatagggagtatttagagaatctactggagtatctgatatattttttcgagcggacagag
ccattgcaagatctcgatagaatatttacaaagcttgcaaccgattttgaagagcaatgg
gcaaatggaatggtagaggggtgggagaatgagagtcaagaaaatgggaatgttccaact
caacatgcggcaattgatcttgattattacagtacagttgaagaggtgatggaagtgggt
cctgaaatgttaaaggaggcattggctgctctaggactaaagacaggtggtactgttcag
cagcgtgctgagagacttttcctcacaaagcacacacctcttgagcagttggaccagaag
cattttgccaagggttcacgtcgatcagaacaaaatggtactcctgctgctccaaaagaa
gctgacagttcaaaagaaattgccctcctagaggcgaagttgagaaagatatgtgaatta
ctgtatgagactatcgtgcgaacaaaagaaaatatcgagaagaaacaggctttgacatat
gaggaaatggaagcagaacgtgaagaggaagaagtacaagcagacaccgaaagtgatgat
gaggagcagcagatctataatcctctcaagttgccaatgggctgggatgggaagcctatt
ccttactggttgtataagcttcatggacttgggcaggaattcaagtgtgagatatgtggg
aatcacagttactgggggcgtagggcttttgagcggcattttaaggaatggcgccatcag
catggtatgcgttgcctcggcattcccaataccaaaaacttcaatgaaatcacatcaatt
aaggaagcaaaggtactgtgggagagaatacaggaacggcaaggactgaacaagtggcgc
ccagatctagaagaagagtatgaagacaaagagggcaacatctacaacaagaagacctat
accgatctgcagcgccaaggcctgatctaa

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