KEGG   Vitis vinifera (wine grape): 100256945
Entry
100256945         CDS       T01084                                 
Name
(RefSeq) uncharacterized protein LOC100256945 isoform X5
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100256945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100256945
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100256945
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100256945
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind ARM_Cnot1 DUF3819 CNOT1_HEAT NOT1_connector
Other DBs
NCBI-GeneID: 100256945
NCBI-ProteinID: XP_059589757
LinkDB
Position
16:complement(join(15378765..15378902,15379007..15379108,15379186..15379428,15379589..15379723,15379836..15379940,15380028..15380219,15380330..15380483,15383930..15383991,15384072..15384218,15384301..15384348,15384437..15384574,15384686..15384832,15386864..15386947,15387041..15387178,15387258..15387361,15387447..15387573,15389114..15389230,15389307..15389384,15389616..15389660,15390012..15390137,15390233..15390362,15390468..15390709,15390799..15390978,15408444..15408596,15408751..15408846,15408944..15409049,15409147..15409229,15409322..15409462,15409550..15409789,15409896..15410024,15410106..15410153,15410296..15410442,15410534..15410642,15410763..15410908,15420660..15420727,15420885..15420984,15421100..15421312,15426374..15426613,15426691..15426785,15434374..15434477,15436067..15436320,15436410..15436532,15436654..15436791,15441111..15441305,15441411..15441602,15441693..15441821,15441898..15442011,15442098..15442437,15442567..15442795,15442920..15443220,15449557..15449670))
AA seq 2442 aa
MKMLFSSLISSQIRFLLHGLNDSNFDSNFDSVVRELCQFIEYGYEASILLLQTCLDHMNF
HGGDMNDMQLKPDVLAAIFRYLLDKPNFSTVLCEALRSSVIGEGFLGEFCNVLQFSVSEK
IGLGLALADSENGDVRTSGQNFCMRQIEKLCGNPASIDSHEKIQKIIMFLYQSEGLSKHV
DSFMQMLSLMEFKERPPFVLAPLLSDDLHEDSFSRNLDLFYDFSENEFDSILAEMENDTS
MADIMRELGYGCTLSTSHCKEVLSLFLPLSEVTLSRILSTIARTHAGLEDNQNSYSTFCS
AIGSSALSDSSCLSCWNVDVLVDSIKQLAPGINWTLVMENLDHEGFYFPNEGAFSFFMSI
YARACQDPFPLHAVCGSVWNNVDGQISFLRYAVAAPPETFTFAHSIRKLAYTDALHGQEL
PHGQANQAWLSLDLLDVLCQLAERGHAGSVRLMLEFPLKHCPEILLLGIAQINTAYNLIQ
REVSSTVFPMIIGNVMGSGVILHLWHSNPKLLVHGFLDFIKSDQGNMVTILDLCQELKIL
SSVLEQIPFHFSIRLAALASQKEYASLDKWLNDCLRTHKDVFFEECLKFLKEITFDAADD
VSANSFQHSGAGMNINEETSSIFWKVLQANTDQIASKQLSEELKSLHRASMHVSPRLQNV
GASDSSTSDVYTNDIEAEANSYFHQIFSGQLTIDSMIQMLARFKESSDRREQSIFECMIQ
NLFEEYRFFPRYPEKQLKIAAGLFGSLIKHQLVTHLTLGIALRGVLDALRKPTDSKIFTF
GTKALEQFLDRLIEWPQYCYHILQISHLRGTHPELVAFIERALARTSSSHSESNGGNNSS
TDPHSGSAPATLENVEVPDSSWQLLGSRTTQPGQQTSSPLPAQQRHQGFLGDRHKTSASL
INYGRPILPPTGHASNVSTSDALGSQKSLQTVSSQTATGVSAAVSSSTGLLHPSRSIAST
RFGSALNIETLVAAAERRDTHIEAPTSEIQDKISFLINNIASANIEAKAKEFTEVLDEQY
YPWFARYMVMKRASIEPNFHDSYLKFLDKVNSKTLNKEIVKAAYENCKVLLRSELIKSSS
EERSLLKNLGSWLGKFTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVVPFTSKILEPCQS
SLAYRPPNPWTMAILGLLVEIYALPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDRVR
EIEGNPDFSNKDVGASQPQMVSDINPGIMSTLSQVELQPDIVNSSHPGGHLNVMTQYPSG
LHLASGSLTEDDKIATLSLGDRLPTGQGLSQVPPAQSPYSVGQIPAPIPNIGSHIIFNQK
LGALGLHYFQRVVPIAMERAIKDIMAPIVQRSVTIATQTTKELVLKDYAMESDESRIYNA
AHLMVASLAGSLAHVTCKEPLRGAITNQLRNSFQGLNIGTELLEQAVPLVTNDNLDLGCA
VIENAATEKALQTIDGEITQQLSLRRKHREGVGPYYDASIYTQGPMGVIPEALRPRPGHL
SHSQQRVYEDFVRFPWQNQSGQSSNAVPAGPPAASSGPGSSGLSRAYASSSGQLSPGFYS
TGTGATGLSATQPLDLISEDMDPSSAQFLSGSSSRIGVMDGVSPHGSKLNSVSFPSVAPT
PEVHPVEASNVGKELGAAALSLPAASTTEHSGSGISEPLLNTGDALDKYQIVAQKLETLL
TKDSGDAEIQGVIAQIPEIILKCIRRDEAALAVAQKVFKSLYENASNSLHVSAHLAILAA
IRDVCKLVVKELTSWVIYSDEERKFNTDITVGLIHKDLLNLAEYNMHMAKLIDAGRNKAA
TEFAISLLQTLLIQDSRVSVSELPNLVDALGKLAMRPGSPESLQQLVEIARNPAANAAIL
SGLNVGKDDKEKQSREKKSSDRSMTSREDYTNADSVGVDPVGFRDQVSVLFADWYQIYEL
HGTNDPAITHFISQLQQSGFLNGDDTSDRFFRLLTELAVAHCLSSEGINSGSLSLHSPQT
GQNMSFLAIDVYAKLVILILKFCVMEHGPSKLLLLPKIFSVTVRVIQRDSEEKKASFNPR
PYFRLFINWLFDLVSPDPILDGANFQVLIAFANAFHALQPLKIPAFSFAWLELVSHRSFM
PKLLTVNPPKGWLYVQRLLVDLFKFMEPYLRNAEMAEPILFLYKGTLRVLLVLLHDFPEF
LCDYHFSFCDVIPSSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRIFSEVD
AALKSKQMKSDVDEYLKTRHQGSSFLPDLKQRLLLPQNEAAQAGTRYNVPLMNSLVLYVG
MQTIQQLQTKSSPPLAQQMAHNGPLELYLMGSAMDIFQTLIAELDTEGRYLFLNAIANQL
RYPNNHTHFFSFVLLYLFVEASQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNSR
YNFWSRTFTRCAPEIEKLFESVSRSCGGPKPVDDSMVSDNMH
NT seq 7329 nt   +upstreamnt  +downstreamnt
atgaagatgcttttctcgtcgctcatctccagtcagattcggttcttgcttcatggcttg
aacgattccaacttcgattccaacttcgattccgtggttcgcgagctctgtcagtttatt
gaatatggatatgaggcaagcattttgttgctccagacatgcttggatcacatgaatttt
catgggggagacatgaatgatatgcaactcaaacctgatgtactagctgcaatctttaga
tatttattggataagccaaatttcagtaccgtgctttgtgaagcattaagaagctcagtt
attggtgaaggatttcttggagagttctgtaatgtgttgcagttttcagtgtctgagaaa
attggccttggtcttgctttggcagactcagagaatggtgatgttagaacaagtgggcaa
aatttctgcatgcgtcagattgagaaattgtgtggtaatcctgcttctattgattctcat
gagaaaattcagaaaattattatgttcctatatcagtcagagggcctttccaagcatgta
gactcattcatgcaaatgctgtctttgatggagtttaaagaaaggccaccatttgtatta
gctccattactttcagatgatttacatgaggacagtttttcaaggaatttggatttgttc
tatgatttcagcgaaaatgagtttgatagtattctagcagaaatggaaaatgacacaagt
atggctgatattatgagggaacttggttatggatgcacgcttagtacttctcattgtaaa
gaggtcttatctctcttcttgcctctctctgaagtcactctctcaagaatacttagcaca
attgcccgcacgcatgctggccttgaggataatcaaaattcgtattcaacattctgctct
gctattggtagcagcgccttatctgattcttcatgcttgagctgttggaatgttgatgtc
cttgtagattccattaagcaacttgctcctggaatcaattggactcttgtcatggaaaat
ctagaccatgaaggcttctactttcccaatgagggggccttttcttttttcatgtccatt
tatgcccgtgcttgtcaggatccctttccactccatgccgtatgtgggtctgtctggaat
aatgttgacggccagatctcttttctaagatatgctgtagcagccccaccagaaacattt
acctttgcacattctattaggaaactggcatataccgatgcattgcatggtcaggagctt
ccgcatgggcaggcaaaccaagcatggttatctcttgatcttttagatgtgttgtgtcaa
ctagctgagagaggccatgctggttcagtgcgactgatgcttgagtttcctcttaaacac
tgccctgaaattctacttcttgggattgcacaaattaatactgcctataatcttatccag
cgtgaggtatcttccactgttttccccatgattattggaaatgtcatgggaagtggtgtt
attcttcacctttggcactctaatcccaaacttttagtgcatggattcttggattttatt
aaaagtgatcaagggaacatggttacaattttggatctttgccaagagctgaagattcta
tcatctgtgttggagcagattccattccattttagcattcggctggctgcactagcttct
cagaaagaatatgcaagtctcgataaatggttgaatgattgtctaagaactcataaagat
gttttctttgaggagtgtctcaagtttttgaaggagataacctttgatgcagcagatgat
gtctctgccaattcatttcaacattctggtgctggaatgaatataaatgaggagacaagt
tcaatcttttggaaggtcctccaagctaatactgatcagattgcctctaaacagctctct
gaggagttgaaaagtttgcatagagcatctatgcatgttagtcctaggctacagaatgtt
ggggcttcagattcatcgacatctgatgtttacacgaatgatatagaggctgaggcaaac
tcttatttccaccaaatattttctggtcagctgaccattgattcaatgattcaaatgctt
gcacgtttcaaggaatcttcagacagaagggaacaatcaatatttgagtgcatgatacaa
aacctatttgaggagtacaggttcttccctaggtatccagaaaagcagcttaagattgcg
gctggtctatttggttctctgataaagcaccagcttgtgactcatctcacgcttggtatt
gctcttcgtggagtgttggatgcattgcgcaaaccaacagattcaaaaatattcactttt
ggaacaaaggctttggagcagtttctggaccggcttatagagtggccacaatattgctat
catattttgcaaatatctcatttacgtggtactcatccagagcttgttgcatttattgaa
cgagctcttgctaggacttcgtctagtcactctgaatcaaatgggggcaacaattcttca
actgatccccatagtggttctgctccagctactttggaaaatgtggaggtgcctgattca
tcatggcaacttttaggatctaggaccacacagcctggacagcagacctcatctccacta
ccagcacaacaaagacatcaagggtttcttggtgacaggcataaaacatctgcatctttg
attaattatgggagaccaattctacctcccactggtcatgcttcaaacgtttccacaagt
gatgcacttggcagtcaaaagtccttgcaaacagtgtcgtcacagactgctactggtgtt
tctgcagccgtgtcttcctcaactggtttacttcatccttcccgaagcattgcatcaact
aggtttggttctgctttgaacattgaaacgcttgttgcggcagcggagagaagagataca
catatagaggctcctacatctgaaattcaggacaagatatcatttttgattaataatatt
gcgtctgcaaatattgaagctaaagcaaaggaattcactgaggttttagatgagcagtac
tatccatggtttgcccggtacatggtgatgaaaagagcaagcattgagcccaacttccat
gactcatacttgaagtttttggacaaagttaattcaaagacattgaataaggagattgta
aaagctgcttatgagaattgcaaggttcttttgagatctgagcttataaaatcaagttct
gaagaacgctctttgctaaaaaatctgggaagttggcttggaaagtttaccataggcaga
aatcaagtactcagggctcgagaaatagatcccaagtctttgataatagaggcatatgag
aagggcctgatgattgctgtggtcccatttacctcgaagattttggaaccttgccaaagc
agtcttgcctatcggcctcccaatccttggaccatggcaattcttggtttacttgttgag
atttatgcattgccaaatcttaaaatgaatcttaagtttgacattgaggtcctgtttaag
aaccttggtgtggatatgaaggaagtaaagccgacttctcttcttaaagatcgagttcgg
gaaatagaaggaaaccctgatttttctaataaagatgttggggcatctcagccacaaatg
gtttctgatattaaccctggaatcatgtccacattgagtcaagttgagctacagcctgat
attgttaattcatctcatcccggtggccacttaaatgtaatgactcagtatccttctggt
cttcatcttgcttctggttcattaacggaggatgataaaatagcaaccttaagcctgggt
gataggcttcctactggtcaagggctttcacaagtacctccagcgcagtcaccatattct
gttggtcagatccctgcaccgatccctaacattggaagccatatcattttcaaccaaaaa
cttggtgctttgggcttgcattatttccagagagttgtacccattgcaatggagagggct
atcaaagacataatggctcctattgttcaacgtagtgttactatagcaactcagacaaca
aaggaacttgttctaaaggattatgctatggagtctgatgagtcccgcatatacaacgct
gcacatttaatggttgcaagtctagctggaagtttggctcatgtcacatgcaaggaaccc
cttcgcggcgccataacgaatcagcttaggaattcatttcagggtttaaacattggaact
gaacttctagaacaagctgtgccacttgttactaatgataatcttgatttgggttgtgct
gtgattgaaaatgctgcaacagagaaggcattacaaaccattgatggtgagattactcaa
caactttccttgagaaggaagcacagggagggtgttggtccttattatgatgcgagtatt
tatacacaaggtcctatgggtgtcataccagaagccctccgccccagacctggtcatttg
tcccattcccaacagcgggtttatgaggattttgttcggtttccctggcaaaatcaatct
ggacagagctcaaatgcagttcctgctggtccacctgctgcatctagtggtcctggcagt
tctggtttgtctcgtgcttatgcttcatcatcaggacagcttagcccaggcttctactct
actgggactggggctaccggattgagtgctactcagcccttggatctaatttctgaggat
atggaccccagttctgcccaattcctcagtggctcctcttcacgcattggagtgatggat
ggtgtttctcctcatggttctaaacttaactctgtttcatttccgtcggtggctcctacc
cctgaagtccatccagtggaggcctctaatgttggaaaagaattgggagctgctgcacta
tcattgcctgctgcttctaccacagaacattcggggagtggcatctcggaacccttgttg
aatactggagatgcattggataagtaccaaattgttgcacagaagttggaaactttgcta
accaaggactcaggggatgctgaaattcagggggttattgctcagattcctgaaataata
ctcaaatgtatacgccgagacgaggctgcattggctgtagctcaaaaggtgtttaagagt
ttatatgagaatgcatcaaacagtttacatgtcagtgctcatcttgcaatccttgctgct
attcgagatgtttgcaagcttgttgttaaggagctcactagttgggtcatttactcagat
gaggagaggaagtttaacacggatattactgttggtctcatacacaaggacttactaaac
cttgcagaatacaatatgcacatggcaaaacttattgatgctggaaggaacaaagctgct
acagagtttgcaatttctcttctccagaccttgctgattcaagattcaagagttagtgtt
tctgaacttcccaatcttgttgatgcattgggaaagcttgcaatgagacctggatctcct
gaatctttacaacagttagttgagattgcaagaaatcctgctgctaatgcagcaattctt
tctggtttgaatgttggaaaggatgataaggagaagcaatctcgagaaaagaagagttct
gatcgatccatgacaagcagagaagactataccaatgctgactctgtgggagttgatcct
gttggttttcgtgatcaggtttctgtgctgtttgctgattggtaccagatatatgaactt
catggtacaaatgacccagctattacccattttatctcacaactacaacaaagtggtttt
ctaaatggggatgatacatcagatcgttttttccgactgctcacagaacttgctgtggca
cattgtctctcttctgaaggaatcaattctggatcattgtcactgcattcacctcaaaca
gggcagaacatgtcatttcttgcgatagatgtgtatgcaaagcttgttattttgattcta
aagttttgtgtgatggagcatggaccaagtaaactcctcctgttgccaaagattttttct
gtaactgtgagagtcatccaaagagattccgaggagaagaaggcatcttttaatccaagg
ccatatttcaggttgtttattaactggctttttgaccttgtgtccccagaccctatcctg
gatggtgctaactttcaggtgttgattgcttttgctaatgctttccatgcattgcagcct
cttaaaatccccgcattcagctttgcatggcttgagctagtgagccacaggagttttatg
cctaagctgcttacagtaaaccctccaaaaggttggctttatgttcaacgcttgcttgtg
gacctgttcaaattcatggagccatatctaaggaatgctgaaatggcagagccgatactt
tttctatataaaggcactctaagggtactgcttgtgctgctccatgatttcccggagttc
ctgtgtgattatcatttcagcttctgtgatgtgattccttcaagctgcatccagatgcga
aatgtcatcctcagtgcattcccacgtaatatgaggctgcctgatccttctactcccaac
ttaaagattgatttgttagcagagatcaatcaatccccacgcatattctcagaggtggat
gctgctcttaaatcaaagcagatgaagtcagatgtagatgagtatctcaagacaaggcat
cagggatcttcattcttgcccgatctaaagcagagattgcttctgccccaaaatgaggca
gcacaagctgggacccggtacaatgtgcccttgatgaactcccttgtcctttatgtggga
atgcagaccatccagcaattacaaacaaaaagctcgcctccacttgcacagcagatggcc
cacaatggtccgctggagttgtatttgatgggttctgccatggacatcttccagactctg
attgcggagcttgatacagaagggcgttacctcttccttaatgccattgcaaatcagctg
cgctatcccaacaaccacacacattttttctcctttgttcttctctacttgtttgttgag
gcaagccaggaaatcatccaggagcaaattacaagagttttgctggaacgtctgattgta
aatagaccccacccatggggccttctcatcacttttatcgagctcatcaagaattcaaga
tacaacttctggagcaggactttcacaaggtgtgcgccggagattgagaaactgtttgaa
tcggtttctcgatcttgcggtggacccaaacctgtagatgattccatggtctccgacaac
atgcactga

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