KEGG   Vitis vinifera (wine grape): 100261590
Entry
100261590         CDS       T01084                                 
Name
(RefSeq) uncharacterized protein LOC100261590
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100261590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100261590
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100261590
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100261590
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind ARM_Cnot1 DUF3819 CNOT1_HEAT NOT1_connector
Other DBs
NCBI-GeneID: 100261590
NCBI-ProteinID: XP_010661326
UniProt: A0ABY9DEN4
LinkDB
Position
15:join(16543987..16544085,16545008..16545299,16545436..16545664,16545792..16546131,16546216..16546329,16546453..16546581,16546658..16546849,16546954..16547148,16559562..16559699,16559825..16559944,16560033..16560286,16560972..16561075,16564830..16564924,16565008..16565244,16573982..16574188,16574311..16574392,16574506..16574573,16578362..16578507,16578665..16578773,16578858..16579004,16579158..16579205,16579279..16579407,16579500..16579736,16579844..16579984,16580073..16580158,16580254..16580359,16580467..16580562,16580666..16580818,16583061..16583243,16583345..16583577,16583666..16583801,16583888..16584010,16584768..16584812,16592893..16592970,16593054..16593170,16602788..16602914,16602994..16603094,16603173..16603310,16603392..16603475,16608156..16608302,16608399..16608530,16608614..16608661,16608748..16608894,16608979..16609040,16617476..16617629,16617731..16617922,16618015..16618119,16618357..16618491,16618806..16619042,16619631..16619732,16619810..16619959)
AA seq 2422 aa
MTHSSAAFANQIRFLLQSLNEENADHVFEELREFVDYGIEGSVLLLETCLDYLSRAELKN
TQVEAIFASLFKYIFDRPNFCTIFCQSLRSTAISERFLENLSNTLHFSACEKIGIGLALL
DSEHLEFRTCGRNFCMAQIEELCANPVPMKSVEQIQNIIMYLHQAEGLYPLLDSFIQMLS
LVHLERGASFVLAPLLSDELRKANLLGDLDLFCESRENDFDAILAEMEKERNVDNIMMEL
GYGCTVNALQCKEILCLFLPLTEATISRLLGTVARTQAGLGDNQNTFVESLSALGSNSLS
ELPLLSSWNIEILIDSVKQLAPGTNWIGVIEKLDHEGFYVPNYDAFSFLMAAYRHACPDQ
FPLHAICGSVWKNVQGQLSFLKYAVSAPPEIFTFAHSARQLAYVDAVYGHKFQLGHANHA
WLCLDLLSVLCQLAERGHGSSVQSMLEYPLKHYPEILLLGLAHINTAYNVLQYEVSSIAF
PLIVGNSMGNGMILHLWHVNPDLVLRGFVDVHIIDPNNMTRILDICKELKILSQVLELIP
SPFSIRLAALASRHELVDLEKWLPDNLTTYKDIFFEECLKFLREIQFGAAQVSSSSFHHS
GAIMDLYSETSSTFLKVLHAHTGLVTSSQLSEEMERLHVTIMRANPKFQSCGATDSSISD
RYAEDIEAESNSYFLQMYSCQLTVDAVVLKLSQFKESSEKREQLIYECMIANLFEECKFF
PKYPERQLRIAAVLFGSVISHQLVTHLSLGIALRYVLDAMRKPPDAKMFVFGTKALEQFA
DRLVEWPQYCNHILQISHLRNTHPDLVAFVEQTLARVSSGHLESDGGNNSDDQHHGSTQL
TSVNMEMSASSLQSLGASSIQPGQPSSLPLQHRLQSSLDDRHKASVTLSNSTKPLVAPAG
EPLVASSGDATSIDKSLNSINAPATVSSSPGSIRPLRGITSTRFGSAMNIETLVAASERR
ETPIEAPALEIQDKISFIINNISAANVEAKAKEFTEIFKEQYYPWFAQYMVMKRASIEPN
FHDLYLKFLDKVNSKALNKEIVQATYENCRVLLGSELIKSSSEERSLLKNLGSWLGKFTI
GRNQVLKAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCRNSIAYQPPNPWTMGILGLL
AEIYVLPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLENRPRQIEGNPDFSNKDIGASHP
PMISEVKSAIVSTPNKVELPVEVASPHTGGHTHLLSQYAAPFHLPTGTLMEDEKLVALRL
SDQLPSAQGLLQATPSQLPFSVSQPTTLIPNIGTHVIINQKISALGLHLHFQRVAPIAMD
RAIKEILSGMVQRSVNIASQTTKELVLKDYAMESDEALIYNAAHAMVSNLAGSLAHVTCK
EPLRASLARQLGNLLQGLTISNERLEQAVQLVTNDNLDKACAEMERAAADMAVQTIDKEL
EIRLSLRRKHREGIGSTFFDGSMYTQGSMAVLPEALRPKPGHLSLSQQQVYEGFVQLPRQ
NQSNEGSNMLPADSAPPGGAGQSVSHGSALVQLDPTIYSSSPGNSGLMAVSQSLDFVTED
LESTSVQLLSASSTHMGMGDGVIKHISENDSVVASFPSTASASDLSSVEPSDAVKELVTA
SQSFPSTVASERLGISISEPLVTRDALDKYQIVAEKLETLVTNGASESELQGLVAEVPEI
IHRCASRDEAALAVAQKVFKGLYADASNSSNVAAYLAILVAIRDLCKLVVKELTSWVIYS
DEERKFNKDIIISLIRSELLNLAEYNVHMAKLVDGGRNKAATEFAFSLLQTLVIEERGVI
SELPNLVDAMAKIASKPGSPESLQQLIEIVKSPVANMDALSVNSLGKEDKTRQSRDKKAP
IHSAATREEHNNGEPVEQDPTGFREQVSKLFVEWYRICELPGTNDAACAHYVLQLHQNGL
LKGEHISDRFFHLLMEISFSHCLSSEAIITGPLQSHQQVHSMSFFAIDIFSNLVFSILKY
SPVDQGFSKFNLISKILAVTVRFIQKDAEEKKTSFNPRPYFRFFINWLSELGSPDPVFDG
ANFQVLITFANAFHALQPLKIPAFSFAWLELVSHRSFMPKLLTGNPSKGWPYLHRLLVDL
FQFMEPFLRNAILGEPVHFLYRGTLRVLLMLLHDFPEFLCGYHFTFCDVIPPSCIQMRNI
ILSAFPRNMRLPDPSTPNLKIDLLVEINQSPLILSDVDASLKVKQMKTDVDEYLKMGQQG
SSFLSGMKQRLLLLPIDAARAGTRYNIPLINSLVLYVGMQAMQQLKARTPPHVQPMASSP
LAGFLVSAALDIFQTLLAELDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQE
IIPEQITRVLLERLIVSRPHPWGLLITFIELIKNPRYNFWNRTFISCAPEIEKLFESVSR
SCGGANPLDESTVSGGFSENMH
NT seq 7269 nt   +upstreamnt  +downstreamnt
atgacgcattcctctgccgccttcgcgaaccagattcggttcttgcttcagagcttgaac
gaagaaaacgctgaccatgttttcgaggagctccgtgagtttgttgattatggaattgaa
ggtagtgtgttactacttgaaacctgcttagattatctgagtagggcagagttgaagaat
acacaggtggaagcaatttttgcttcattattcaagtacatctttgatagaccgaatttc
tgcacgatattttgccagtcactaagaagtacagcaatcagtgaaagatttcttgaaaat
ctctctaataccctacacttttcagcttgtgaaaaaattggcattggtctggctcttttg
gattctgaacatcttgaattcagaacgtgtgggaggaatttctgcatggctcagattgag
gaattgtgtgccaatcctgttcccatgaaatctgttgagcaaattcagaatatcattatg
tacctccatcaggctgagggcctttacccgcttttagattcctttatacagatgttatcc
ttagttcatttggaaaggggtgcctcctttgttttagctccattgctttcagatgaattg
cgcaaggcaaacttattgggagatttggatttgttctgtgaaagcagggaaaatgatttt
gatgctattctagcagaaatggagaaggaaagaaacgtggacaacattatgatggaactg
ggttatggatgcactgttaatgctttgcagtgcaaagagattttatgccttttcttacca
ctgactgaagccaccatttctagattactcggcacagttgcacgcacccaagctggtctc
ggggacaatcagaacacatttgttgaatccctctcggcccttggtagcaacagtttgtcc
gagctgcccttattgagctcctggaatattgaaatcctcatagattcagtgaagcaactt
gctccagggaccaactggataggtgttattgaaaagctagatcacgaaggattctatgtg
ccaaattatgatgcattctcttttttgatggctgcttatagacatgcatgtccggatcaa
tttccactgcatgctatttgtggatctgtttggaagaatgttcaaggccagctatctttt
cttaaatatgctgtatcagcaccaccagaaatatttacgtttgcacattctgcaagacaa
ctggcatatgttgatgctgtgtatggccataaattccaacttgggcatgcaaatcatgca
tggttatgtcttgaccttttgagtgtgttgtgtcaactggctgaaagaggtcatggtagt
tctgtccaatcaatgcttgagtatcctctaaaacactatcctgaaatcctgcttcttgga
cttgcgcatattaatactgcatataatgtcctccaatatgaagtgtcttccattgctttc
cccttgatagttgggaattccatgggaaatggtatgattcttcacctctggcatgttaat
cctgatcttgtactgcggggatttgtagatgttcacatcattgatccaaacaacatgact
agaattttggatatctgcaaggagctaaagattctatcacaagtattggaattaattcct
tctcctttcagtatcagacttgctgcccttgcttctcgacacgaacttgtggaccttgag
aagtggttgcctgataatttaaccacatacaaagatattttctttgaggagtgccttaag
ttcttaagggagattcaatttggtgcagcacaagtttcttccagttctttccatcattct
ggtgccatcatggatctttattcagagacaagttctaccttcttgaaggtccttcatgct
catactggcttggttacctctagccagctttctgaagaaatggaaaggctgcatgtaaca
attatgcgtgctaatcctaaatttcagagctgtggggctacggattcatcaatctctgat
cgatatgcagaggatattgaggcagaatcaaactcctacttccttcaaatgtattcttgc
cagctgactgttgatgcagttgttttaaagctttctcaattcaaggagtcttctgagaaa
agggaacaattaatttatgaatgcatgattgcaaatctctttgaagaatgcaaattcttc
cccaagtatcctgagaggcagctcagaattgctgcagttctttttggttctgtgatcagc
catcaacttgttactcatctttcacttgggatcgccctgcgctatgtgttggatgcaatg
cgtaaacctccagatgcaaaaatgtttgtatttggaaccaaagccttggagcagtttgcg
gatcgtttagtggaatggccacagtattgcaatcatatcttacaaatatctcatctacgt
aatactcatccagatcttgttgcttttgttgaacaaactcttgcaagggtttcatcaggg
catttggaatcagatggaggcaacaatagtgatgatcaacatcatggttctacacaactt
acctctgtgaatatggagatgtctgcatcgtcattacaatcacttggagctagcagcata
cagcctgggcagccttcttcacttccacttcaacatagacttcaaagttctcttgatgat
aggcataaagcatctgtaactttatctaactccacaaaaccacttgtagctcctgctggg
gagcctttggttgcttcctcgggtgatgcaactagtattgacaagtctctgaattcaatt
aatgctccagccactgtgtcttcatctcctggatctatccgtcctctccgagggattact
tctactaggtttggctctgctatgaacattgaaacgcttgtggctgcttcagagagaaga
gaaactcccatagaggccccagcattagagattcaggacaaaatatcatttataattaat
aatatttcggctgcaaatgttgaggctaaggcaaaagaatttactgaaatttttaaagag
cagtactatccttggtttgcgcagtatatggtgatgaaaagagcaagcattgagccgaat
tttcatgatttgtacttgaagttcctagacaaagttaattcaaaggccttgaataaggag
atagtccaagccacttatgagaactgcagagttcttttgggatcagagcttataaaatca
agttcagaagagcgttcactgctaaagaatttgggtagctggcttgggaaatttacaatt
ggtaggaaccaagttctgaaggcccgtgagatagatcccaaatcattgatcatagaggca
tatgagaaggggttgatgattgctgtaattccatttacctccaagatcctagaaccttgt
cggaacagtatagcatatcaacctcctaatccctggaccatgggtattcttggattactt
gctgagatctatgtactgccaaatttgaaaatgaacctaaagtttgacattgaggtcctg
ttcaagaaccttggtgtggatatgaaagacataacaccaacttctctccttgaaaaccgt
ccaagacaaattgaagggaatcctgatttctctaacaaggatattggggcgtcccatcca
ccaatgatttctgaagttaaatctgcaatagtatctacgccaaataaagttgagttacct
gttgaggttgccagtcctcacactggtgggcacacacatttgttatctcagtatgctgct
ccttttcatcttcctactggaacattgatggaggatgaaaagctagtagctctacgcttg
tctgatcagctaccttctgctcaaggactgttacaagccaccccatcacaattaccgttt
tctgttagtcagcctactaccctaatacctaatattggaactcatgttatcatcaaccag
aagattagtgctttgggcttgcacttgcattttcagagagttgctccaattgccatggat
agagctatcaaagaaatattgagtggtatggttcagcggagtgttaatatagcttctcaa
acgacaaaggagcttgttctaaaggactatgccatggagtcagatgaggcactcatatat
aatgcagcacatgcgatggtatcaaatctggcaggaagtttagctcatgtaacatgcaag
gaaccactacgggcttcattggcaaggcaactggggaatttgcttcagggtttgactatc
tccaatgaacgtctagaacaagctgtacaacttgttaccaatgataaccttgataaggcc
tgtgcagaaatggaacgagctgcagcggatatggctgtacaaacaattgacaaggaactt
gagatacgactttctttaagaaggaagcacagagaaggtattggttccactttttttgat
ggaagcatgtatacacaaggttctatggctgttctaccggaggccctgcgccctaaacct
ggccacttatccctttctcagcagcaggtttatgagggctttgttcagcttcctaggcaa
aatcaatctaatgaaggctcaaacatgttgcctgctgattcagctccacctggtggtgct
ggccagtctgtttcacacggttcagcgttagtacaacttgaccccactatttactcatct
agccctggaaactcagggctcatggcagtttctcagtccttggatttcgtcactgaggat
ctggagtctacttcagttcagctccttagtgcttcctcaactcacatgggaatgggggat
ggtgttatcaagcacatttccgaaaatgattctgttgttgcttcatttccttcaactgct
tcagcctctgatttgagttctgtggaaccatccgatgctgtgaaagaattggtaactgct
tcacaatcatttccttcaactgttgcctccgagcgccttggaattagtatctcagaacct
ttggtcacaagggatgcattggataagtatcaaattgttgcagaaaagctggaaacttta
gtaactaatggtgctagtgaatcagagcttcagggccttgttgctgaagttcctgaaatt
atacaccgatgtgctagtcgagatgaggctgctttggctgtggctcaaaaggtttttaag
ggtctgtatgccgatgcatcaaacagttctaatgttgctgcttatcttgcaattctggtt
gccattcgtgatctttgcaagcttgttgttaaggagctcactagttgggtgatttactca
gatgaggagcgcaaattcaacaaagatattattattagccttattcgcagtgaattgctg
aaccttgctgagtataatgttcatatggcaaaacttgttgatggaggaaggaataaagct
gcaacagagtttgccttttctcttctccaaactttggtgattgaagaacgtggagtcatt
tcagaacttcccaatcttgttgatgcaatggcaaagattgcgagtaagcctggatctcct
gagtcattgcaacaattgattgagattgtcaagagtcctgttgctaatatggatgctcta
tctgttaattctcttggaaaggaggataagacaagacaatctagagacaagaaggctcct
atccactctgcagccaccagggaagaacataacaatggagaacctgtggaacaagatcct
actggttttcgtgagcaggtttccaagctgtttgtggaatggtaccgcatatgtgaactt
cctggtacaaatgatgcagcttgtgcacattacgtcttgcagttgcatcaaaatggactg
ctgaaaggagaacatatatctgatcgctttttccacctgcttatggaaatttctttttca
cattgtctttcttctgaggcaatcattactggtccactacaatcacatcagcaagtgcat
agcatgtccttctttgccattgatatcttttcaaatcttgtgttttcaatcctgaagtat
tctcccgtggaccagggattcagtaaattcaatctcatttccaagattctggcagtaacc
gtgagatttattcaaaaagatgctgaggagaagaaaacatcttttaatccaagaccgtat
ttcagatttttcattaattggctatcagaacttggttcccctgatcctgtctttgatggt
gcaaactttcaggttttgataaccttcgctaatgcatttcatgctttgcaacccctcaaa
attcctgcattcagctttgcatggcttgagctggtgagtcacaggagtttcatgccgaaa
ttgctaacaggaaacccttcaaagggttggccttatcttcatcggttgttggtggacttg
ttccaattcatggagccattcttgagaaatgccatactaggagagccggttcattttctg
tatagaggcacacttagggtgctgttaatgctacttcatgatttcccggagtttctatgt
ggctatcattttaccttctgtgatgtgatccctccaagctgcatacagatgcgaaacatt
atccttagtgcatttccccgaaatatgaggcttccagatccatctactcccaatttaaag
atagatttgctggtggagatcaatcagtccccacttattctctcagatgttgatgcgtct
cttaaggtgaagcagatgaagaccgatgtagatgagtatctcaagatggggcaacagggg
tcgtcatttctcagtggaatgaagcaaagactgctgcttctgccaattgatgctgctcgt
gctggaacccgttataatatacccttgatcaattcccttgtactttatgttggaatgcag
gctatgcagcagctgaaagcaagaacaccacctcatgtgcagccaatggccagcagccca
ttggctggcttcttggtgagtgctgccttggatatttttcagactctactagcagaactg
gacactgaaggacgctacctctttctgaatgcggttgctaaccaactacgttatccaaat
acccatacacactacttctccttcattcttctttacttgtttgcggaatcaaaccaggaa
atcattccagagcagatcactagagtgttgttggaacgccttattgtcagtcgacctcat
ccatggggtcttctgattaccttcattgagctcatcaagaaccctagatacaatttttgg
aaccggaccttcataagctgtgcaccagagatcgagaagctctttgaatcagtctcaaga
tcatgtgggggtgcaaaccccttggatgagagtaccgtctcgggtggattttctgaaaat
atgcactga

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