Vibrio ziniensis: G5S32_13510
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Entry
G5S32_13510 CDS
T07449
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vzi
Vibrio ziniensis
Pathway
vzi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5S32_13510 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vzi03021
]
G5S32_13510 (rpoB)
03400 DNA repair and recombination proteins [BR:
vzi03400
]
G5S32_13510 (rpoB)
Enzymes [BR:
vzi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5S32_13510 (rpoB)
Transcription machinery [BR:
vzi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5S32_13510 (rpoB)
DNA repair and recombination proteins [BR:
vzi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5S32_13510 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RUFY4
Motif
Other DBs
NCBI-ProteinID:
QIH42916
UniProt:
A0A6G7CLJ1
LinkDB
All DBs
Position
1:complement(2919505..2923533)
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AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILNIFFEKVNFEVKDQTLMME
LVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVDFIEVPVEYTVGKVSSKD
YVNEATGEIIIAANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSDTIRVDSTTDRI
SALVEIYRMMRPGEPPTKEAAETLFNSLFFSEERYDLSTVGRMKFNSSIGREDAGEQGTL
DETDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGIVT
DEVDYLSAIEEGQFVIAQANAKLTEESTFADELITARQKGESGLHPREHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERNVAVDSGVTAVAKR
GGVVQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGELVARG
DVIADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLFARVRSLLLTAGYSQAKVEAIDRKQLLAQTLEDDELQTQLEQMAEQYDE
LKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDETGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAK
LREFLQKVYDLGDTRQSVDIASMSDEEVRVLAGNLRGGLPIATPVFDGANEASIKELLSL
ADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gtattggacattccatacctgctatcgatccagctcgattcattcgataaatttatcgaa
caggatcctgaaggacaatacggtcttgaagctgcttttcgttctgtatttccaattcag
agctacaacggcaattcagagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgtggtgtaacttattcaaaaccactacgcgtaaaacta
cgcctggtgatttttgataaagacgcgccagcaggtactgtcaaagatattaaagaacaa
gaagtctacatgggtgaaattccactcatgacagataatggtacctttgtaattaatggt
actgagagggttatcgtatcccagctgcacagaagcccaggcgtattcttcgacagcgat
aagggtaagacccactcttcaggtaaagttctgtataacgcacgtattatcccttaccgt
ggttcatggttggatttcgaattcgatccaaaggataacctatacgtacgtattgaccgt
cgtcgtaaactgccagcatcgatcattcttcgtgcactaggtaagacgactgaagagatc
cttaatatcttcttcgaaaaagtaaacttcgaagtgaaagaccaaactctaatgatggag
ttggtgcctgagcgtctgcgtggtgaaactgctacgtttgacattgaagctgatggcaag
gtctatgtagagaaaggtcgtcgcgttacggctcgtcacatccgtcaacttgaaaaagat
ggcgttgatttcattgaagtaccagttgaatacacagttggtaaagtatcttctaaagat
tacgtcaatgaagcgactggcgagatcatcatcgctgcgaaccaagaaattagcctagaa
gcacttgcgaacctatctcaagcgggatacaaaaaactagaagttctatttacgaacgat
ctagaccacggtccattcatgtcagacactatccgtgttgacagcacaactgaccgtatc
tctgcgcttgtagaaatctaccgcatgatgcgccctggcgagccgccaacgaaagaagcg
gctgaaacgctatttaatagcctattcttctctgaagaacgctacgatctatcaacagta
ggtcgtatgaagttcaacagctcaatcggtcgtgaagacgcgggtgagcagggcactctt
gatgaaacagatatcatcgaagtgatgaagaagcttatcgcgatccgtaacggtattggc
gaagtggacgatatcgaccaccttggcaaccgtcgtatccgtagcgtaggcgaaatggca
gaaaaccaattccgtgttggtcttgtacgtgttgaacgcgcagttaaagaacgtctaagc
ctaggcgatcttgacaacgtgatgccacaagatctgatcaacgcgaaaccaatttctgct
gctgttaaagaattctttggttcttcacagctttcacaattcatggaccagaacaacccg
ctttcagaagttacgcacaaacgtcgtatttctgcattgggccctggtggtttgactcgt
gaacgcgctggcttcgaagtacgtgacgtacacgtaactcactacggtcgtctatgtcct
atcgaaacgcctgaaggtccaaacatcggtcttatcaactctctatctgcgtttgcacgt
tgtaacgagtacggtttcctagagactccttaccgtcgtgtagtagatggcattgttact
gatgaagttgattacctatcagctatcgaggaaggtcaattcgttatcgctcaggcgaac
gcgaaactgactgaagagagcacttttgctgacgaactgatcacagcacgtcaaaaaggt
gaatctggtcttcaccctcgtgaacacgttgactacatggacgttgcgacaaaccaagta
gtatctatcgctgcttcgcttatcccgttcctagaacacgatgacgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggctgttccaactctaagagcagataagcctctagtt
ggtactggtattgaacgtaacgtggcggttgactcaggtgtaactgcggttgctaaacgt
ggtggtgttgttcagtctgtggacgcatctcgtatcgttgttaaggttaatgaagaagag
ttggtacctggtgaagcgggtatcgatatttacaacctaactaagtacacacgttcgaac
caaaatacatgtatcaaccagcgtccatgtgtgatgccgggtgaactcgttgctcgtggt
gacgtaatcgctgatggtccatcaactgaccttggtgaacttgctcttggccagaacatg
cgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttagtttctgag
cgcgttgttcaagaagaccgctttaccactatccacattcaagaactatcttgtgtggct
cgtgatactaagcttggtgctgaagagatcactgcagatattccaaacgtaggtgaagct
gctctatctaaactggatgagtcaggtatcgtttacattggtgcagaagttaagggtggc
gacatcctagttggtaaagtaacacctaaaggtgaaactcagctaacacctgaagagaag
ctactacgtgcgatcttcggtgaaaaagcttctgacgttaaagatacttcactacgtgtg
ccgaactctgttgctggtacggttatcgatgtacaagtcttcactcgcgatggcgtagag
aaagacaaacgtgcacttgaaatcgaacaaatgcagctgaaagaagcgaagaaagacctg
actgaagagttccaaattcttgaaggtggtctatttgcacgtgttcgttctctgctactt
acagcaggttacagccaagctaaagttgaagctatcgaccgtaagcagttgctagcacaa
acgctagaagacgacgaactacaaactcagctagagcaaatggctgagcagtacgacgaa
ctgaaagctgacttcgataagaaattcgaagctaagcgtcgcaagatcactcaaggtgat
gatctagcaccaggcgtactgaagatcgttaaagtttacctagcggtgaaacgtcgcatc
caaccgggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccatacgatgaaactggtcagccagtagatatcgtactaaaccca
ctgggtgtaccttcacgtatgaacatcggtcagatcctagaagttcacttaggtctggcg
gctaaaggtattggtgacaagatcaaccaaatgatcaaggaacagcaagagcttgctaag
ctgcgcgaattcctacagaaggtttacgatcttggtgatactcgtcagagcgtcgacatt
gcttcaatgagcgatgaagaagtacgcgtactggctggtaacctacgtggcggtctaccg
attgctacaccagtattcgatggtgcgaacgaagcttcaatcaaagaactattgtcacta
gcagaccttccaacgtctggccagttgacactgtttgatggtcgtacaggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttctacgggttcttacagtcttgttactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgctacaagaaatgctaacagttaagtcggatgacgttaacggccgt
actaagatgtataagaacatcgtagatggcaaccacagcatggaacctggcatgccagaa
tcgttcaacgtattgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
