KEGG   Candidatus Westeberhardia cardiocondylae: WEOB_121
Entry
WEOB_121          CDS       T09022                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
wca  Candidatus Westeberhardia cardiocondylae
Pathway
wca03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:wca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    WEOB_121 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:wca03021]
    WEOB_121 (rpoC)
   03400 DNA repair and recombination proteins [BR:wca03400]
    WEOB_121 (rpoC)
Enzymes [BR:wca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     WEOB_121 (rpoC)
Transcription machinery [BR:wca03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     WEOB_121 (rpoC)
DNA repair and recombination proteins [BR:wca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      WEOB_121 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Paxt-1_C
Other DBs
NCBI-ProteinID: CEN32079
UniProt: A0A0H5BWV2
LinkDB
Position
I:129658..133884
AA seq 1408 aa
MKNLFNFLKKQPSKIEEFDAIKILLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTHSKVRRERMGHIELASPTAHIWFLKS
LPSRIGLILDMPLRDVERVLYFESYVVIENGMTNLTCCKLLTEEQYLDALEEFGDEFDAK
MGAEAIQYLLRKMNLKEKCFQLYQELEEVNSESKKKKITKRIKLLESFIQSKNNPEWMIL
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIIRNEKRML
QEAVDALLDNGRRNRVITGSGKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMGLELFKPFIYGKLELHGLATTIKSAKRMVENEDSVVWDMLEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTLEAQLE
AKELMMSTNNILSPANGEPIIVPSQDMVLGLYYMTRNRINSKGEGMVLTGPEEAEHVYKA
GIAELHASVKVRIDEYELNSERKFVKSTKLIDTTIGRAILWMIVPKGLSYSLVNKIVGKK
AISHMLNTCYRVLGLKETVIFSDQIMYTGFAYATKSGSSVGIDDMVIPESKDNIIFDAEN
EVSEIQNQFLSGLVTSSERYNKVIDIWAKANDRVASAMMDNLSSEVVSRSNGEKEKQLSF
NNIFVMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCETISGVVMTALIEGGEIKEALYDRV
LGRIVAEDVLDPESCNVLISRNTLLDEYWCKILEHSSLDSVKVRSVVTCETDFGVCAKCY
GRDLARGNLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSVAESSIQVKTGGILR
LNNAKFVVNSDGKLVITSRNAELKLVDVFGRTKESYKLPYGSIVNKKDGSSIFPGEIVAN
WDPHTVPVISEVNGFIKFFDMIDGQTILRQTDELTGVSSVVVLDTSERVNKELRPALRIV
DNNDENFVSEINISAQYFLPGRAVVQLENGAYVSIGDTLARLPQEIFGTKDITGGLPRVA
DLFEARLPKEPAILAEITGVISFGKETKGKRRLIITPKNENEKVYEEMIPKWRQLNVLEG
EYVECGDVISDGPESLHDILRLRGVYKVTHHIISEVQEVYRLQGVKINDKHIEVIIRQML
RKGTIVDSGDSNFLEGEQVEYSHIRAVNRKLRRDKKKLIKYSRDLLGITKASLATESFIS
AASFQETTRVLTESSVSGKRDELRGLKENVIVGRLIPAGTGYTYHQERIRNRNKKRSCSF
DRKKISLDEASANLTKLLNVELGDNIKD
NT seq 4227 nt   +upstreamnt  +downstreamnt
gtgaagaatttatttaattttttaaaaaaacaacctagtaaaattgaagagttcgatgca
ataaaaattttattggcttctccagatatgattcgttcttggtcctttggtgaagttaaa
aaaccagaaacaattaattatagaacgtttaaaccagagagagatggtttattttgtgca
agaatttttggaccggttaaagattatgagtgtttatgcggaaaatataaacgtttaaaa
catagaggtgttgtttgcgaaaaatgtggagtagaggtaacacattctaaagttcgtcgt
gagagaatggggcatatagaattagcttctcctacagcacatatttggtttttgaaatct
ttaccttctcgtattggattaattttggatatgcctttacgggatgttgagcgagttttg
tattttgaatcttatgttgttattgaaaacggaatgacaaatcttacatgttgcaaactt
ttaactgaagagcaatatttggatgctttagaagaatttggagatgaatttgatgcgaaa
atgggcgctgaagcaattcaatatcttttgagaaaaatgaatttaaaagaaaaatgtttc
caattatatcaagaattagaagaagtaaattctgaaagcaagaaaaaaaagataactaaa
agaattaaattattagaatcttttattcaatctaaaaataatcctgaatggatgattcta
actgtgttaccagttttgccacctgatttacgtcctttagttccattggatggagggaga
ttcgcaacatctgatctgaatgatttatatagaagagtaattaatagaaataatcgttta
aaacgtttgttagatttatcagctccagatattattataagaaatgaaaaaagaatgctt
caggaagcagtggatgcattattggataacggaagacgtaatagagttattaccggatct
ggaaaaagaccattaaaatcattagctgatatgattaaagggaaacaaggtcgttttagg
cagaatttattaggtaagcgagttgattattctggtcgttcagttattactgttggtcca
tatttgcatttgcatcagtgtggtttaccaaaaaaaatgggtttagagttatttaaacct
tttatttatggaaagttagaattacatggtttagctacgacaattaaatctgcaaaaaga
atggttgaaaatgaagattcggtagtatgggatatgttagaagaggtaattcgcgaacat
cctgttatgttaaatcgagctccaacattacatagattaggaatacaagcttttgagcca
gtattggttgaaggaaaagcaattcaattacatccattagtgtgcgctgcatataatgca
gattttgatggtgatcagatggctgttcatattcctttaacattagaggcacaattggaa
gcgaaagaattgatgatgtctactaataatattttgtctcctgctaatggagaacctatt
attgttccttcgcaagatatggttcttggtttgtattatatgactagaaatcgtattaat
agtaaaggggaaggtatggtattaactggaccagaggaagcagaacatgtgtataaggct
ggtattgcggaattacatgcatcagttaaagtccgaatagatgagtatgaacttaattct
gaaagaaaatttgttaaatctacgaaacttattgatacaactataggcagagctatttta
tggatgattgttccaaaaggtttatcttattcattggtaaataaaatagtaggaaaaaaa
gctatttctcatatgttaaatacttgttatcgagttttagggttgaaagaaactgttatt
ttttctgatcaaattatgtatactggttttgcttatgctactaaatctggatcttcggtg
ggaatagatgatatggtaattcctgaaagtaaggataatataattttcgatgctgagaac
gaagtatctgaaattcaaaatcaatttctttcaggattagtaacttcttctgaaaggtat
aacaaagtcatagatatatgggcaaaagctaatgaccgtgtggctagcgctatgatggac
aatttatctagcgaagttgttagtagatcgaacggggaaaaggagaaacagctttcgttt
aacaatatttttgttatggcggattctggcgctcgaggttcagctgcacaaattaggcaa
ctcgctggcatgcgaggtttaatggccaagcctgatggttctattattgaaactcctatt
actgctaattttcgtgaagggttgagtgttttacaatattttatttccactcatggagca
agaaaaggtttagcagatacagcattaaaaactgctaattctggatatctaactcgtcgc
cttgttgatgttgcacaagatttagtagttacggaagatgattgtgaaactatttctgga
gttgttatgacagcattgattgaaggtggggagattaaagaggcgttatatgatcgtgtt
ttagggcgtattgtagcggaagatgtattagaccctgagtcttgtaatgttttaatttcg
agaaatacgttgcttgatgagtattggtgtaagattttagaacacagttctttggatagt
gttaaagttcgatcagtagtaacttgtgagactgattttggggtatgcgcaaaatgttat
ggaagagatttagcacggggtaatttagttaataaaggtgaagctattggtgttattgca
gctcaatctattggtgagcctggtacacaattaactatgcgtacttttcatattggggga
gcagcttctcgatctgtagcagaatctagcattcaagtaaaaacaggtgggatattgcgt
ttaaataatgcaaaatttgttgttaatagtgatggaaaattagtaattacttctagaaat
gctgaattaaagttggttgatgtatttggtcgtactaaggaaagttataaattaccttat
ggttctatagttaacaaaaaagatggatctagtatttttcctggagaaattgttgcaaat
tgggatccgcacactgttcccgtgatttctgaagtaaatggatttattaaattttttgat
atgattgatggacaaactattcttcgccaaactgatgaattgactggggtatcttctgta
gtagtattagatacatctgagcgtgttaataaagaattaaggccagctttgagaattgta
gataataatgatgaaaattttgtttctgaaattaatatatctgctcaatattttttacct
ggaagagctgttgtgcaattagaaaatggggcatatgtctctattggggatactttagca
cgtttgcctcaagaaatttttggaactaaagatataactggtggtttacctagagttgca
gatttatttgaagcgcgtttaccaaaagagccggcaattttagctgaaattactggtgtt
atttctttcggaaaagaaacaaaaggaaaacgtagattgattattactccgaaaaatgaa
aatgaaaaggtttatgaggagatgattccaaagtggagacaacttaatgtattggaagga
gaatatgttgaatgtggtgatgttatttcagacggacctgagtctcttcatgatattctt
agattgcgaggtgtttacaaggttacacatcatattattagtgaagttcaagaagtttat
cgattacagggtgtaaaaattaatgacaaacatattgaagtaattattagacaaatgttg
cgaaaaggcactatagttgattctggtgattcgaattttttagaaggggagcaagtggaa
tattcacatattagggctgtgaatagaaaattaagacgcgacaaaaaaaaattaataaaa
tattctagagatttattgggtattacaaaagcttcgttggcaactgagtcatttatttct
gcagcatcttttcaagaaacaactagagtattaactgaatcttctgtttctggaaagcgt
gatgaattacgaggtttaaaagaaaatgtaattgtaggaagattgattcccgctggtact
ggttatacatatcatcaagagcgtattaggaatcgaaataaaaagagatcttgttctttt
gataggaagaaaattagtcttgatgaggcttctgcaaatttgaccaagttgttaaatgtt
gaattaggagataatataaaagattga

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