Weissella ceti WS105: WS105_1186
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Entry
WS105_1186 CDS
T03295
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
wci
Weissella ceti WS105
Pathway
wci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WS105_1186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wci03021
]
WS105_1186
03400 DNA repair and recombination proteins [BR:
wci03400
]
WS105_1186
Enzymes [BR:
wci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WS105_1186
Transcription machinery [BR:
wci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WS105_1186
DNA repair and recombination proteins [BR:
wci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WS105_1186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AIM64776
LinkDB
All DBs
Position
complement(1237718..1241215)
Genome browser
AA seq
1165 aa
AA seq
DB search
MVGTLVKYGKHRVRRSYARIKEVLDLPNLIEIQTDSYNWFLDEGLREMFTDILPIEDFQD
KLSLEFVDYKLMEPKYTVEEARDHDANYSAPLHVTLRLTNKETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYNEEADKNGRPVFGTTFIPSRGAWMEFETDAKGLD
YVRIDRTRKLPMTELVRALGFGSDTEILEILGSNYDSLGLTLDKDVHKDINDTRVEEALK
DIYDRLRPGEPKTAESARSLLTARFFDPRRYDLAPVGRYKINKKLSLKTRLMGMTLGETL
ADPETGEVLFEKGTLIDKKVMSVLAPFLDRDDFKTETHMPSEDAIVTEPVVLQRILVQDP
SDPEAVVPMIGNGQFDESVRTIKTADIIAGMNYFLNLQLNIGQTDDIDHLGNRRVRRVGE
LLQNTFRIGLSRMERVVRERMSIQDPDTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQT
NPLGELTNKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMDPIETPEGPNIGLINSLATY
ARVNRYGFIETPYRRVSWDTHKVTEKTDYLMADEEDNFVVAQGNSVLDDDGSFTTETVLA
RKGHDNIEVPIDQVDYMDVSPKQIVAVATAAIPFLENDDSNRALMGANMQRQAVPLIDPH
SPLIGTGIEYKAAHDAGVAIIAKFAGTVEYVDGREIRVRRDDGSLDKYKLMKFRRSNAGK
NYNQRPIVKVGDIVDIDDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIIINERLI
RDDVYTSIHIEEYESEARDTKLGPEEFTREIPNTGEEQLKNLDDRGIIRVGAEVDDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKVPHGGGGVVQDVRIFTRENGDELA
PGVNMMVRVYIAQRRKIQVGDKMAGRHGNKGTVSVIVPSEDMPYMPDGTPVDIMLSPMGV
PSRMNIGQVLELHLGMAARELGIHVASPVFDGARDSDIWDAIKEAGLPADGKSVLYDGRT
GEAFDKRVAVGIMHYMKLAHMAEDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAHTLQEILTYKSDDVVGRVKTYEAIIKGEQIPKPGVPESFRVLVKELQALGLDM
KVLDANSEEIELRDMDDEMETKLLT
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttggtaggaacactagttaaatacggtaaacaccgtgttcgtcgtagttacgcgcgaatt
aaggaagtccttgatttgccaaacttgattgaaatccaaacggattcatacaactggttc
ttggatgaaggattgcgtgaaatgtttacagacattttgccaatcgaagatttccaagat
aagttgtcattggaatttgtggactataagcttatggagcctaagtacacagtagaagaa
gcacgtgaccatgatgcgaattattcagcaccattgcacgttacgttgcgtctaacaaat
aaggaaactggtgagattaagtctcaagatgttttctttggtgatttcccattgatgaca
gaacaaggaacgttcatcatcaacggtgcggaacgtgttatcgtttcacaacttgtacgt
tcacctggtgtgtactacaacgaagaagcagataagaacggacgtcctgtatttggaaca
actttcattcctagccgtggtgcttggatggaatttgaaacagatgctaagggattggac
tacgtgcgtattgaccgtacacgtaagttgccaatgactgaattggttcgtgcccttggt
ttcggttcagacactgaaatcttggaaatcttgggatcaaactacgactcactagggttg
acgttggataaggacgttcacaaggacatcaacgacacacgtgttgaagaagccttgaag
gacatctacgaccgtttgcgtccaggagaacctaagacagcagaatcagctcgttcattg
ttgacagctcgattcttcgacccacgtcgttacgatttggcaccagttggtcgttacaag
atcaacaagaagttgtcattgaagacacgtttgatgggtatgactttgggtgaaactttg
gctgatcctgaaacaggagaagtgttgttcgaaaagggtacattgatcgacaagaaggtt
atgagtgtcttggcaccattccttgatcgtgatgactttaagactgaaacacacatgcca
tcagaagatgcgattgttacagaacctgttgttttgcaacgtattcttgtacaagaccca
tcagatcctgaagcagtagtacctatgattggtaacggacaattcgacgaatctgttcgt
acaatcaagacagctgacattattgctggaatgaactacttcttgaacctacaattgaac
atcggtcaaactgatgacatcgaccacttggggaaccgtcgtgttcgtcgtgttggtgaa
ttgttgcaaaacacattccgtattggtttgagccgtatggaacgtgtggttcgcgaacgt
atgtcaattcaagatccagatactgttacaccacaacaattgattaacattcgtccagtt
gttgcggctgtgaaggaattcttcggatcatcacaattgtcacaattcatggaccaaacg
aacccattgggtgaattgacaaacaagcgtcgtttgtcagcgcttggacctggtggtttg
acacgtgaccgtgccggatatgaagtccgagacgtgcactatactcactatggtcgtatg
gaccctattgaaacacctgaaggacctaacatcgggttgatcaattcattggccacatac
gcgcgtgttaaccgttacggattcatcgaaacaccttaccgtcgtgtctcatgggacaca
cacaaggttacagaaaagactgactacttgatggccgacgaagaagataactttgtcgta
gcgcaaggtaactctgtcttggatgatgatggatcatttacaacagaaactgttttggct
cgtaagggacacgataacatcgaagttcctatcgaccaagttgactacatggacgtttca
cctaagcaaatcgttgccgtagccactgcggctattcctttcttggaaaacgacgactca
aaccgtgctttgatgggagccaacatgcaacgtcaagcggttcctttgatcgacccacac
tcaccattgattggtacgggtatcgaatacaaggccgcccacgacgctggggttgctatc
atcgccaagtttgctggaacagttgaatacgttgatggacgtgaaatccgcgttcgtcgt
gacgatggttcattggacaagtacaagctaatgaagttccgtcgttcaaacgctggtaag
aactacaaccaacgtccaatcgttaaggttggcgacattgttgatatcgatgacgtcttg
gctgacggaccatcaatggaacaaggtgaattggccttgggacaaaacccattgattgcc
ttcatgacttggcaaggatataactttgaagatgccatcatcattaacgaacgtttgatt
cgtgatgacgtgtacacgtcaattcacattgaagaatacgaatcagaagctcgtgacaca
aagcttggccctgaagaattcacacgtgaaatccctaacactggggaagaacaattgaag
aatttggacgaccgtggaatcatccgcgttggtgctgaagttgatgatggcgacattttg
gttggtaaggtaacacctaagggagttactgaactatcagctgaagaacgcttgttgcac
gccatcttcggtgaaaaggctcgcgaagttcgcgatacttcattgaaggtacctcacggt
ggtggtggtgtcgtacaagacgttcgtatcttcactcgtgaaaacggtgatgaattggca
cctggtgtgaacatgatggtgcgtgtatacatcgcgcaacgtcgtaagattcaagttggt
gataagatggcgggacgtcacgggaacaaaggtacggtttcagttatcgtaccttctgaa
gacatgccgtacatgccagatggaacacctgttgatatcatgctttcacccatgggtgtg
ccttctcgtatgaatatcggacaagtgcttgaattgcacttgggtatggctgctcgcgaa
ttgggtatccacgttgcttctcctgtctttgacggggctcgtgactcagatatctgggat
gctatcaaggaagctggtttgccagctgacggtaagagtgttctttacgacggtcgtact
ggtgaagcctttgacaagcgtgttgcggttggtatcatgcactacatgaagctagcccac
atggcggaagacaagatccacgcacgttcaatcggaccttactcacttgttacgcaacaa
ccattgggtggtaaagctcaattcggtggacagcgtttcggggaaatggaagtttgggcc
cttgaagcgtacggggctgctcacacattgcaagaaatcttgacttacaagtccgacgac
gttgttggacgtgttaagacatacgaagcaatcatcaagggtgaacaaattcctaagcca
ggtgttccggaatcattccgtgtcttggttaaggaattgcaagctcttggtttggacatg
aaggttctggacgcaaattctgaagaaatcgaattgcgtgatatggacgatgaaatggaa
acgaagttgttaacctag
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