Wujia chipingensis: H9Q76_11790
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Entry
H9Q76_11790 CDS
T08109
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wcp
Wujia chipingensis
Pathway
wcp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9Q76_11790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wcp03400
]
H9Q76_11790 (mfd)
Enzymes [BR:
wcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9Q76_11790 (mfd)
DNA repair and recombination proteins [BR:
wcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9Q76_11790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
SLFN-g3_helicase
PRP9_N
Motif
Other DBs
NCBI-ProteinID:
QNL99381
UniProt:
A0A7G9FLF0
LinkDB
All DBs
Position
complement(2530351..2533887)
Genome browser
AA seq
1178 aa
AA seq
DB search
MKALTLAFQDDPRFAELKKHRDESGGIHHVWGMDRRITPLLMEALSDTKRFRLIVTYEER
RAREIVEDYRFYSRQTFYYPAKDALFYSADIHSNNTVQERLEIFKKIAEGRPCTVVTTIE
GLMDKIPSISHIIENILTIKVGDTLQLDTFSRKLTTLGYEKTSIVETPGQFSVRGGIIDI
FSLTEECPYRVELWGDDIDSIRSFDVESQRSMERVEEFVIYPSTEMVLDDVRISKGIAKL
EKEHKAQAKLLKEQFHTEQYARLNKMVESVLEELKEFNSTMGLDSMVEYFYDDTVSFLDY
FPTDTDIFIDDPERVNQRAGAYAMQFGMSMEGRLEGGYVLPTQANVLYDAKTVVARLVNR
TPILLSELYKKQPAWKEQYAFQIDAKGLVSYNNSFEDLMKDIEKYKKKDYRILILSPSAT
RGKRIAKNLQDNDVMAYFTENREQPLKPGEVRISVGRMETGFEIPECHLLVIAEGDIFTS
KELKKRKKLPKYAGEKIAGFSDISVGDYVVHQNHGVGIYRGIDKVETDGRMKDYISIEYA
KGSKLFVPVEQLDRIGKLSGKDGARVKLNKLGGPEWEKVRTRVKGHVEDIAKELIELYAI
RSSTQGYKYSEDTVWQREFEEMFPYEETLDQQKAIDDTKHDMESGKIMDRLVCGDVGFGK
TEVAIRAAFKAVQDNRQVAYLVPTTILAEQHYNTFCERMKNYPVNIRMLSRFCTPKEVKE
TLEQMKSGMVDIVIGTHRLLSKDIVFKNLGLLIIDEEQRFGVKHKEQIKQMKKNVDVLTL
TATPIPRTLHMSLVGLRDISLLEEPPVDRLPIQTYIMEYDLEFVKEAINRELARNGQVYY
VYNRVETIADITGQLRQVLPDATIEFAHGKMPERELEAMMRRFIKGEIDVLVSTTIIETG
LDIPNVNTIIIHDADRFGLSQLYQLRGRVGRSNRSAYAFLLYKRDKMIKEVAEKRLKAIR
EFTDLGSGYKIAMKDLEIRGAGNLLGQEQSGNIEAVGYDLYCQMLNDAIRRLSGETVREE
FVTNVELPLNAYIPDSYVKNEYVKLDLYKRISKCANREDNDAILEEVRDRFGEPPKPFFR
LLDVAYLKAIAHEVYITDIKYVGDEVRFYMLPQAPVQAERVNPLLKRYKNTLRLTAGKQT
YFRIRMSKLIEEEMVSSCEKVIEDIRTLYNTEDVNHEA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcattgacacttgcatttcaggatgatccaaggtttgcagagttaaaaaaacac
cgggatgaatcaggcggtatccaccatgtatgggggatggatcgccggatcaccccactt
ttgatggaggcactgtcagacacaaaacggtttcgcctgatcgtgacctatgaggagcga
cgcgcgcgggagatcgtcgaggactatcggttttacagccgtcagaccttttattatccg
gcgaaggacgctctcttttattccgcagatattcacagtaacaataccgtgcaggagcgt
ctggagattttcaagaagatcgcagaagggcgaccatgtaccgttgttacgaccatcgag
ggattgatggataaaattccatccatctcgcatatcatagaaaatatattgacgatcaag
gtcggagataccttgcagctcgatacattttcacggaagctcacaacacttggatatgaa
aaaacttcaatcgtagagacaccggggcagttttcggtcagaggaggaatcatcgacatc
ttctccctgacggaagagtgcccttatcgtgttgagttgtggggagatgatatcgacagt
atccggagctttgacgtggaaagccagcgttcgatggaacgtgtcgaggagtttgtcatc
tatccatctacggagatggtgctcgatgatgtgcggatcagcaaggggattgccaagctg
gagaaggagcataaggcacaggcgaagcttttgaaggaacagttccacacggagcaatac
gcacggctgaacaagatggtggagtcggtattagaggagttaaaggagtttaattccacg
atgggattagacagtatggtggaatatttctacgacgacacggtgtcgtttttggattat
ttcccaacagatacggatatcttcattgacgatccagagcgtgtgaaccagcgtgctggt
gcgtatgcgatgcagtttggcatgtcgatggaaggccgtctggagggcggttatgttctg
ccgacacaggcaaatgtgctttatgatgccaagaccgttgtggcaagactggtaaatcgt
acgccgatcttgctttcggagttgtacaagaagcagccagcatggaaggaacagtacgca
tttcagattgatgcaaaggggcttgtcagctacaacaacagcttcgaggatctgatgaag
gacatcgagaaatataagaagaaggattatcggattctgatcctgtcaccatccgcgaca
cgaggcaaacgtatcgcgaagaacttacaggataatgatgtcatggcgtactttaccgag
aaccgggaacagccgctcaaaccgggagaggtacgcatcagtgtcggtcgaatggagacg
ggatttgagattccggagtgtcatctgcttgtgatcgcagagggtgatatatttacctct
aaggaactgaaaaaacgaaagaagctgccgaaatatgccggtgagaagattgccggattc
tcagatatttctgttggagattatgtcgtacatcaaaatcatggtgtcggaatctaccgc
ggtatcgacaaggtggaaaccgatggacgcatgaaggactatatcagtatcgagtatgcg
aagggcagtaaattgtttgtgcctgtggaacagctcgaccgcatcggcaagctgtccggc
aaggatggcgcacgtgtcaaactgaataagcttggcggaccggagtgggagaaagtgcgc
acacgtgtcaagggacatgtggaggatattgcaaaagaactgatcgagctgtatgcgatc
cgatcgagcacacagggctacaaatattcggaggataccgtatggcagcgggagtttgaa
gagatgttcccgtatgaggagacattggatcagcagaaagccattgacgataccaaacac
gatatggagagcggtaagatcatggatcgtctcgtctgtggagatgtcggattcggaaag
acagaggttgccatccgggcagcgtttaaggcagtacaggataaccggcaggtagcctat
ctggtaccgacgacgattcttgccgaacagcattacaacacattctgtgagcgtatgaag
aactatccggttaatatccggatgctgtcccggttttgtacaccgaaggaagtaaaagag
acgttggagcagatgaagtctggtatggtcgatatcgtgatcggtacacaccggctgctt
tccaaggatattgtatttaaaaatctgggacttttgatcattgacgaggaacagcggttc
ggcgtcaagcacaaggaacagatcaagcagatgaagaaaaatgtggatgtgttaactctc
acggcgacaccaattccacgaaccctgcatatgagtctggttggactgcgcgacatcagt
ctgctggaagagccgccagtcgaccggctgccgatccagacgtatattatggagtacgat
ctggagtttgtaaaagaggcaatcaaccgggagcttgcgcgaaacggacaggtatattat
gtgtataaccgggtagagacgatcgcggacatcacgggacaactccgtcaggtgctgcca
gatgcaacgattgaatttgcacatggcaagatgccggagcgggagcttgaagcgatgatg
cgccgttttatcaagggtgagattgatgtgctagtatcgacgacgatcattgagacggga
ctggatatcccaaatgtcaatacgatcattatacatgatgcagaccggttcggtctgtca
cagctctatcagctgcggggacgtgttggacgttccaaccggagtgcctacgcattcctg
ctctataagcgcgataagatgataaaagaagtcgcagagaagcggctgaaagcaatccgg
gagtttacagatcttggctccgggtataagatagcaatgaaggatctggagattcgtgga
gccggaaatctgcttggacaggagcagtcgggaaatattgaggcagtcggttatgatctg
tattgccagatgttgaacgatgcgatccggcgtctgtctggtgagacggtgcgtgaggag
ttcgtgacaaacgtagaacttccgctcaatgcctatattccagacagctatgtgaagaat
gaatatgtgaagctggatttgtataagagaatctcaaaatgtgcgaaccgcgaggataat
gatgccatcttagaggaggtgcgtgaccggtttggagagccgccaaagccgttcttccgc
ttgcttgatgtggcgtatctgaaagcaattgcacatgaggtttatattacggatatcaaa
tacgtaggcgacgaggtgcgattttacatgctgccgcaggcacctgtgcaggcggaacgg
gtcaatccgttattgaaacggtataagaacacattgcggcttaccgcgggcaaacagaca
tatttccgtatccgtatgtcgaagctgatcgaggaagagatggtatcttcctgcgagaag
gtaattgaggatatccgcacattgtataatacggaggatgtgaaccatgaagcataa
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integrated database retrieval system