Williamsia herbipolensis: OG579_08080
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Entry
OG579_08080 CDS
T09708
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
whr
Williamsia herbipolensis
Pathway
whr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
whr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OG579_08080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
whr03021
]
OG579_08080
03400 DNA repair and recombination proteins [BR:
whr03400
]
OG579_08080
Enzymes [BR:
whr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OG579_08080
Transcription machinery [BR:
whr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OG579_08080
DNA repair and recombination proteins [BR:
whr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OG579_08080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
WUM21721
UniProt:
A0AAU4K6U9
LinkDB
All DBs
Position
complement(1799887..1803843)
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHKWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLQAEMEVEKKGVADTRDSDLEERAKKLEED
LAELEREGAKADARRKVKDGGEREMRKIRDTAQRALDDLEEIWDKFTKLSPKDMIIDERL
YRELQDRYGEYFTGAMGAEAIKKLLETFDIEAEGEILRDTIRNGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTALKDDKVGAYT
ASSNDDVERGVYSTPAEAIMAMDRGALSVQAPIKVRLTDQRPPADIEAEQFPDGWKFGQP
WTIATTLGRVLFNELLPVQYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMADVLVPPTKGAILDKYEERADGLEKKYARGALTPEERRDALVEVWKQA
TEEVGAAMEAYYPEDNPIAMIPKSGATGNMTQVRNLSGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIITTL
AEKQADGTLIRDAHVETSSYARTLATDAVDANGTVVVERGQDLGDPAIEALLAAGITEVK
VRSVLTCTTGTGVCASCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGKAPIAEVTGRIRLEDDDRFYKITIVPDDGSEEVVYDKIS
KRQRLRVFKHEDGSERLLTDGDHVEVGQQLMEGAADPHEVLRIMGPRQVQVHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDSGATEFLPGSLTERAEFEAANRRVVSEGNEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLVGLKENVIIGKLIPAG
TGINRYRNITVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSSDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaactttttcgacgaactgaagatcggtctggcgaccgccgacgacatc
cacaagtggagcttcggcgaggtcaagaagcccgagacgatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcgcatgggccacatcgagctcgccgcaccg
gtcacccacatctggtacttcaagggtgtcccgtcgcgtctgggctacctcctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcaccgcggtcgac
gacgagctccgtcacaacgagctgtcgacgctgcaggccgagatggaggtcgagaagaag
ggtgtcgccgacacccgtgactccgacctcgaggagcgcgccaagaagctcgaagaggat
ctggccgagctcgagcgcgaaggcgcgaaggccgatgcccgccgcaaggtgaaggacggc
ggcgagcgcgagatgcgcaagatccgtgacaccgcgcagcgtgccctcgacgacctcgag
gagatctgggacaagttcaccaagctctctcccaaggacatgatcatcgacgagcggctc
taccgtgagctgcaggatcgctacggtgagtacttcaccggcgcgatgggtgccgaggcg
atcaagaagctcctcgagaccttcgacatcgaggccgagggcgagatcctccgcgacacc
atccgcaacggcaagggccagaagaagctgcgcgcgctcaagcgactcaaggtcgtcgcg
gcgttccagcagtcgggcaactcgccgctgggcatggtcctcgacgcggtgccggtgatc
ccgccggagctgcggccgatggtccagctcgacggtggtcgtttcgcgacctcggatctc
aacgatctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggtcgtcgtggccggcccgtcaccgggccgggcaaccgcccgctgaag
tcgttgagcgacctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgccgaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgatctcaaccaggcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgc
ccggccgtgtgggacgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgccgacgctgcaccgcctcggtatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtccacctgccgctgtcggccgaggcgcaggccgaggcccgcatcctcatgctg
tcgtcgaacaacatcctgtcgccggcatcgggtcgtccgctggccatgccgcgtctggac
atggtcacgggtctgtacttcctgaccgcgctgaaggacgacaaggtcggcgcgtacacg
gcgtcgtcgaacgacgacgtcgagcgcggtgtctactcgaccccggccgaggccatcatg
gcgatggaccgcggcgcgctgtcggtgcaggcgccgatcaaggtccgtctgaccgatcag
cgtccgccggccgacatcgaggccgagcagttccccgacggctggaagttcggtcagccg
tggacgatcgcgaccactctgggtcgggtgctcttcaacgagttgctcccggtccagtac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggtcgcccagaccgtcgacaagctcaaggacgtcggcttc
tactgggccacccgttcgggtgtcaccgtgtcgatggccgacgtgctcgtgccgccgacc
aagggcgcgatcctcgacaagtacgaggagcgggccgacggtctcgagaagaagtacgcc
cgtggcgcgctcacgccggaagagcgtcgtgacgccctcgtcgaggtctggaagcaggcc
accgaagaggtcggtgccgcgatggaggcgtactaccccgaggacaacccgatcgcgatg
atcccgaagtcgggtgcgacgggcaacatgacccaggttcgtaacctgtcgggcatgaag
gggctggtgacgaacccgaagggtgagttcatcccgcgcccgatcaagtcctcgttccgt
gagggtctgacggtcgcggagtacttcatcaacacgcacggcgcccgtaagggtctggcc
gacacggcgcttcgtaccgccgactcgggctacctgacccgtcgactcgtcgacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtggcaccgagcgcggcatcatcaccacgctc
gccgagaagcaggccgacggcacgctgatccgggacgcccacgtcgagacctcgtcgtac
gcgcgcaccctggcgaccgacgcggtcgacgccaacggcaccgtcgtggtcgagcgcggc
caggatctcggtgaccccgcgatcgaggccctgctggccgccggcatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggaaccggtgtctgcgcgtcctgctacggccgc
tcgatggccaccggcaagctcgtcgacatcggcgaggcggtcggcatcatcgccgcccag
tcgatcggtgagcccggtacccagctgaccatgcgtacgttccaccagggtggtgtcggc
gacgacatcaccggtggtctgccgcgtgtccaggagctgttcgaggcccgtgtccccaag
ggcaaggccccgatcgccgaggtcaccggacgcatccgcctcgaggacgacgatcgtttc
tacaagatcaccatcgttcccgacgacggttcggaggaggtcgtctacgacaagatctcc
aagcgtcagcgtctgcgtgtgttcaagcacgaggacggctcggagcgcctgctgaccgac
ggcgaccacgtggaggtgggacagcagctcatggaaggtgctgccgacccgcacgaggtg
ctgcggatcatgggtccccgtcaggtgcaggtgcacctggtcaacgaggtccaggaggtc
taccggagccagggtgtgtcgatccacgacaagcacatcgagacgatcgttcgtcagatg
ctgcgtcgcgtgacgatcatcgactccggtgccaccgagttcctgcccggttcgctcacc
gagcgcgccgagttcgaggcggccaaccgtcgcgtcgtgtccgagggcaacgagcccgcg
gccggacgtccggtgctgatgggtatcacgaaggcatcgctggccaccgagtcgtggctg
tcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggccatcaacagccgc
agcgacaagctggtgggcctcaaggagaacgtgatcatcggcaagctgatcccggccggt
accggtatcaaccgctaccgcaacatcacggtgcagccgaccgaggaggcgcgcgccgcg
gcgtacgccgtgccgtcgtacgacgacacctactacagcccggacggcaccttcggtgct
ccggccggcgctgcggtgccgctcgacgactacggtttctcgtctgattaccgctag
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