Wallemia ichthyophaga: J056_000565
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Entry
J056_000565 CDS
T03457
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
wic
Wallemia ichthyophaga
Pathway
wic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J056_000565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_000565
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
J056_000565
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
J056_000565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
EntA_Immun
Motif
Other DBs
NCBI-GeneID:
20373517
NCBI-ProteinID:
XP_009268468
UniProt:
R9AF50
LinkDB
All DBs
Position
Unknown
AA seq
2159 aa
AA seq
DB search
MSEPPNSPSSNPRKDPQPIIQAQIVFLVSTITEDNLERNYSEIKSLIEQHGQDNQMYFIR
RLLLSYINQLKGIENNPTQIKLLRFELIRLGGRFQLSLHVKDSLDNEQFEGINLDDLISK
LEIPLIESLVIVTALLDAHSSNLVEQSKLILNSWLVDQASKQFIIGAGSFVEDDNPDLII
LLITLLSNNNLDLTHIQSLTLAFSTRLKSALPALIANRVIPFINLTPSKTLAHLLVELSS
TLELRTSVKLVEAAFVKFGWPSTRQQNDSLDLRASELFSCLGQLGIMSNNVDIPTIMSIL
NSYPTKPSYKLIIRGFDSPNNPPPTPNILANILLSAPSYQVSEESPLMGLVGTWVNPSLQ
ISAVAGLLSLSNDQVSFAALSAKKAITVDFVNHSSPAIKAMAATVQSSLWNCIDVVDIVT
KLQDHGPEPINVLARDLLETGCRTHGEIILLGLVQLPKPWSNYHLELITRLLALFLAGNP
SHQLVFLRLWQIDRNFLLSAFKQFYQDNNMNVTRILDVAQDLKILDQVLEIKPVTFAFDL
AALASRREYLNMEKWLQNGVTLHVISFFRDALKFLDSKAKAEAIKLNTGAVNNQLNINVQ
TVAIFLRVLRANAEILPLVADDIEYYKEVRNLCLQYWPRLMNLTPHSEQEPGLSVTTFSP
DLDRQVEDYYHRMYSGELRVDEVIVFLEKCKQSTNSRDHELFAAMIHTVFEEYRHYETYP
AAELALTGILFGSLIQFQVIDFIPLGIAIRYVLTALQSLPNTNRFRFGVQALSQFQRRLP
EWPQVCQALLAIRHLIETIPDLGFYLRLAVEHSNEVRRSQSGNPIGGLDISSPASKLSFN
TVKPDNLGHDEAEDYPVPDEETSDRILFIVNNLAPNNFSSKSGEMRERFKAEYSRWFAHY
LVLERVSIEPNNHNLYMQFLESINESELVRHVLRETYIKVRELLNEDKTVSNSTDRSHLK
NLGSWLGGLTLAKDKPIRHRNISFKELLLEGFDTNKLIVAIPFVCKVLEQCSRSRVFVPP
NPWLMAVLKLLVELYVVADLKLNLKFEIEVLCKSLGIEIKDIEPTNVVKNRPAKDVAPHA
PTAPGASGANVLTSELERLQMAGASNDRVQATLLQQQAAAAAQQQQQLQLQQQIAANGNA
QQNVAPESPLLQHEERTQQNLAPELIAAVPNISQYLVFDSSNPIFANNAHLQRMMHIAID
RAIKEIIAPVVERSVTIASLSTRELIVKDFAMEGDETKMQAAAHLMAQNLAGNLSLVTCK
EPLRISVVSHFRNVLHQSGLSEQSVPEPTVYSAVNENLDVACKVIEKIAMQRAIVEVDDQ
LLEGFISRRKHRETTNQAYWDNAVISSAHFSNSLPDLLRIKPNGLDAQQLQVYEGFNRNN
FPLQPQSQPEVVETMPPTPQRVSVDSNGNAGLINPQQSYERFNHLVVELEKSIINSQVDT
SDLLPPNSELRPLVQEVSILAYQSQNSEDISLSFAQRIVQLLYRAEGNLGREVYITILQH
LCELSMKAAKEVTAWLVLSDDDRKFNVPVTLYLVKARLIHVEELDLTLSRSIIRDMRQSA
IDFAATLIRESIQDQIASRSNFTHCLEALTIAAQNSKTSDAMTKLHQTLKHIQPGNVATP
VLNRLTKTTNDQETALRQRLALNFADWVRIYGMTPQVEKAFIPYISQLQSQGILKGEETS
TLFFRICVELGVESFIKQKNDGVANLSNAFQPIDAFVKLVVLMIKYHMDHTGLNHDQAKQ
VYLNKIISITSLVIAQSHEDLQENFEQKPFYRLYSSLLIELWGIRQSLGAVAYKGIMVTI
SNSLANLQPAYFPRFAHGWVSLISHRNFLPVILAPENHDNWIDFHRLMTALLRFVKAFTS
KPQFEMSSKQIYRATQRILLLLLHDFSEYLSEYYGGLIDVIPSSCTQLRNLILSAYPRNA
ATSTLPDPFLPTIDIEVMSESQNNPTISSDYMSVIINNGLKNLVDKHIDGGDEEVIIGEI
IQKITLESVGNENESDEWKYKIPVINSLVLFIGVDAITRSQADIGSVKFDGGSANVKLIE
TLVNKLDPEARYLILSGIANQLRYPSSHTYWFNKLCLQILEESAGVNENVVEILTRVLLE
RLLVTKPHPWGLLLTFFNIFTNQQFKTYQAKFSTLAPEFATIFDSVEKSFGKVAAVAAE
NT seq
6480 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaccaccaaattcaccgagcagcaacccgcgtaaagacccacagccaataatc
caagcacaaatagtgtttttggtgtcaacgattacggaggacaacttggagaggaattat
tctgagataaagagcctcatcgaacagcatggacaagataaccaaatgtactttatacgc
cgacttctactcagctacatcaatcagcttaaagggattgagaacaatccaacgcagatt
aaacttttacgatttgaattgattagattaggcggtagattccagctcagtttacacgtc
aaggatagcttggataacgagcaatttgagggaattaatttggatgatctgataagcaaa
ttagaaatcccactcattgagtctctcgtcatcgttacagctctcctcgacgcccactct
tcaaacttggtcgagcaatcaaagttgattctcaatagctggcttgtcgatcaagcttca
aagcaattcattatcggcgctggtagcttcgttgaggatgacaaccccgacttgatcata
ctcctgattacgctcttatccaacaacaatctcgatttgacacatatacagtcactcact
ctagccttctcaactaggcttaaatctgccttgcctgctctcatcgcaaaccgtgtcatt
cccttcatcaacctcactccttcaaaaactttagcccatttgttggttgagctgtcgtcc
acattggaattgaggacttcagttaagcttgttgaagctgcgtttgttaaatttggctgg
ccatccactcgccaacaaaatgactctttagacctcagagcttccgagttattttcttgt
ctcggccaattaggtatcatgtcaaataacgttgatataccaactattatgagcattcta
aacagctacccaaccaaaccctcttacaaactcatcattcgtggctttgactctcctaac
aaccccccaccaactccaaacattcttgcaaacattctcctctcagctccatcttaccaa
gttagtgaggaatctcctttgatgggtttagttggcacttgggttaatccttctcttcaa
attagcgcagttgcgggcttgctctcactttccaacgatcaagtctctttcgctgctctt
tcagcgaaaaaagctatcaccgtggattttgtcaatcattctagccctgctatcaaggca
atggccgctaccgtacaatcttctctttggaactgcattgatgtggtagatatcgtcact
aagcttcaagatcatggtccagaaccaatcaatgttttggctcgtgatttgttagagaca
ggatgcagaacccacggtgaaattattcttcttggtttggttcaattgcctaaaccatgg
tcaaactaccaccttgaactaatcacccgtctccttgcgctatttctcgctggtaatcct
tcccaccagctcgttttccttagactttggcagatcgaccgtaacttcctactcagtgcc
ttcaagcagttctatcaagacaacaacatgaacgtcacccgtatattggatgttgctcaa
gatctaaagatcctcgaccaagtgcttgaaatcaagccagtcactttcgcatttgacttg
gctgcactcgccagtcgcagagagtatctaaacatggaaaagtggctacagaacggtgtc
actttacatgtcatttctttctttagagacgctttgaaattccttgactccaaggcaaaa
gctgaagcgatcaagcttaacactggtgctgtcaacaatcaacttaatatcaacgttcaa
acggttgccattttcttaagagtcttacgtgcaaacgccgaaatcttaccattagtggct
gatgacattgagtattacaaggaagttcgcaacctttgcctgcaatattggcctcgctta
atgaacctcacccctcactctgaacaggagcctggattatcagttacgaccttctctcca
gacttagacaggcaagtggaagattattaccatcgtatgtactcaggcgagctgcgtgtg
gatgaagttatcgtcttcttggagaaatgcaagcaatcaaccaattcacgtgatcatgag
ttgtttgcagccatgattcacaccgttttcgaggagtacaggcattatgagacataccca
gcagcggaattggcgcttactggtattctcttcggttcactgatacaatttcaggtgatc
gactttattccactcggtattgctattagatatgtcttgacggcgttacagtcgcttcca
aacaccaacagatttaggtttggtgtacaggctctctcacaattccaaagacgtttacca
gagtggcctcaagtttgtcaagcattgctagcaatcagacatctaatcgaaacaatccct
gacctcggcttttacctaagattagctgtcgagcactccaatgaagtgagaagatctcaa
agtggcaacccaattggtggtttagatatttcctccccagcctccaagctttcgttcaac
acagtcaagccagacaacttgggacacgatgaagccgaagattacccagttccagatgaa
gagacatctgacagaattcttttcattgtcaacaatcttgctccaaacaacttttcatca
aagtcgggcgagatgagagaaagatttaaggccgaatactctagatggttcgctcactat
ctggttctggagcgtgtcagtatcgagccaaacaaccataacctttacatgcaatttctg
gaatctattaatgaaagcgagcttgttcgtcatgttcttcgcgagacttatatcaaagtt
cgtgagcttctcaatgaagacaagacggtcagcaactccactgatcgttcgcacttgaaa
aacctcggttcgtggttgggtggcttgacacttgccaaagacaagccaattcgccatcgt
aacatttcatttaaggagttattattggaaggctttgatacaaacaagttaattgtcgct
attccattcgtttgcaaagtcttggagcaatgttctcgtagcagagtctttgtgccacca
aatccatggttgatggcagttctcaagctccttgttgaactctacgtcgttgcagacctc
aaattgaacttaaagtttgagatcgaggtactttgcaagagtctaggtatcgagatcaag
gacattgagccaacgaacgtcgtcaaaaatcgcccagcaaaggatgtcgctccccacgca
cctacagctccaggtgcatcaggtgcaaatgtccttacatcagaattggaaagattacag
atggctggtgcttcaaacgatcgtgtccaagcaaccttgttgcaacagcaagcagcagcc
gcagcacaacaacagcaacaattacaattacaacaacaaatcgcagcaaatggaaacgcc
caacaaaatgttgcaccagagtcgccattacttcaacacgaagagcgtactcaacaaaac
cttgcaccagagttgatcgctgcagttccaaacatttcacaatacttggtctttgattca
tcgaacccaatcttcgcaaataacgcacatttacagaggatgatgcatattgctattgat
agagctattaaggaaatcattgcacctgttgtcgagcgctcagttaccatcgcttcactt
tctacaagagagttgatcgtcaaggatttcgctatggagggtgacgaaaccaagatgcaa
gctgctgcccatttgatggctcaaaatttggctggtaatctctcacttgttacttgcaag
gagcctctgagaatcagcgttgtctctcatttcagaaatgttcttcaccaatcaggcctc
tctgaacaatcagtcccagaaccaacggtctactctgctgtcaacgagaacttggatgtt
gcttgcaaagtgattgagaaaattgctatgcaaagagctatcgttgaagttgatgatcaa
ctgctcgaaggtttcattagtcgtcgcaagcatagagagacaaccaatcaagcatattgg
gacaatgcagtcatctcatctgcacacttctccaacagcttgccagacttgttacgcata
aagccaaatggtttggatgcccagcaattacaagtctatgaaggatttaaccgcaacaac
ttccccctccaaccacaatcacaacctgaagtcgtcgagactatgcctccaacaccacaa
cgcgtctcagttgattcaaacggtaatgctgggctaattaaccctcaacaatcatacgag
cgttttaaccacttggttgttgagcttgagaagtccatcataaactctcaagtggataca
tcagacctgttaccaccaaactctgaattgcgtccattagtacaagaagtatccattctc
gcataccaatcacaaaattctgaggatatttccttgtcttttgctcaacgcattgtccaa
ttactttaccgtgctgagggcaatttgggcagagaagtttatatcactatacttcaacat
ctttgcgaactttcaatgaaggcagctaaagaggtgactgcatggttagttctctccgac
gacgatagaaaatttaacgtcccagtcacactctatctcgttaaagcgagattgatccat
gtggaggaacttgatcttacattgtctagatcaataattagagatatgaggcaatcagct
atagatttcgctgctactcttattagagaatcaattcaagatcaaatcgcatcgagaagc
aactttacacactgcttagaggctctcactattgcagcacaaaacagcaagacttcagat
gcaatgacgaagcttcaccagactttgaagcacattcaacctggcaatgttgctacacca
gtgctcaacagattgaccaaaactacgaatgaccaagagaccgcactgagacaacgactt
gcattaaactttgctgattgggttaggatttatggtatgacaccacaagtagaaaaagca
ttcattccatatatctcccaattacaatctcaaggtattctcaagggcgaggagacgtca
acacttttcttcagaatctgtgttgagttaggtgtcgagtcattcatcaagcagaagaac
gatggtgttgcaaacttgagcaacgcgttccagccaatcgatgcatttgtcaagttggtt
gtgctcatgattaagtaccacatggaccacacaggactgaaccacgaccaagctaaacag
gtatatctcaacaaaattatctcaattaccagcttggtaattgctcaatctcacgaagac
ttgcaagaaaattttgagcaaaagccgttctacagactttactcaagtcttctgattgag
ttgtggggtatcagacaaagtcttggtgctgttgcgtacaaaggcataatggtcacgatt
agtaactcacttgccaacctccaaccagcatactttccaagatttgcgcatggatgggtt
agcttgatttcacatagaaacttcttacctgtgatacttgctcctgaaaatcatgataac
tggattgacttccacaggttgatgacggccttgttgagatttgtcaaggcattcacttcc
aaacctcaattcgaaatgtcttcaaagcaaatatacagagctacgcaacgcatactcttg
ttgttgttgcacgactttagcgaatacttgtcggagtactacggcggcttgattgatgtt
ataccatcatcttgcactcagcttcgcaatttgattcttagtgcatatccaagaaatgca
gccacaagcacattgccagacccattcttgccaacaattgacattgaggtgatgtcagaa
agtcaaaacaatccaaccatctcctcagactacatgtcagtcattatcaacaatggttta
aagaatttggtggacaagcatattgatggaggagatgaggaagttattattggtgagatt
attcagaagattactttggagtcggttggcaatgagaatgagagcgatgagtggaagtac
aagatcccggtgatcaattcactcgttctatttattggtgtcgatgcaatcactcgctca
caagcggacattggtagtgtcaagtttgatggcggtagtgcgaatgtaaaattgatcgaa
actttggtaaacaagcttgatccagaggctcgctacttgatactcagtggtattgcaaac
cagttacgctacccatcgtctcacacgtattggttcaataaactttgcttgcagatattg
gaagaatcagccggggtaaacgagaatgtagtggaaatactgacaagagtgttgcttgag
cgcttacttgttaccaagccacatccatggggattattgttgacattcttcaacatattc
accaatcagcaattcaagacatatcaagcgaaattctctactttggcgccagagtttgca
acaatctttgatagcgttgaaaagtcattcggtaaagttgcggctgtcgcagctgaataa
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