Wallemia ichthyophaga: J056_003744
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Entry
J056_003744 CDS
T03457
Name
(RefSeq) DNA-directed RNA polymerase I subunit rpa1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
wic
Wallemia ichthyophaga
Pathway
wic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J056_003744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wic03021
]
J056_003744
Enzymes [BR:
wic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J056_003744
Transcription machinery [BR:
wic03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
J056_003744
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Peptidase_C2
MIT
Motif
Other DBs
NCBI-GeneID:
20376696
NCBI-ProteinID:
XP_009267235
UniProt:
R9AIP0
LinkDB
All DBs
Position
Unknown
AA seq
2543 aa
AA seq
DB search
MTNDDDRADKRFRDAIQLERDGKYTEAFSEYVNTAQLYLELRRRCPSPAIVSTESTKPID
TITTKYRLVLERAERTKELCKSANPVNQPHSAVINGRVYPQWRGSNGANHNPAPLPLPAL
STAQLRRGATYQRIAHTDAAIYTIYTPDTPTHTTHITQHDISDCSVVASLSACHSHNGRF
GGCLGVSALHPHNEHGLPRVSDEGVYEIRFYLNGAWRCVAVDDRLPQTPQGDLVAVEVVA
DAAAQGIAHPVAAVRTQIWPALLEKAIMSLWGTYEFSGSDSSTDLQMITGWIPEQIKFNS
SLFKQEKTWRRVLDGSNSGICLLTLGSKSRSADMAQSLLDQGFVENHAYAVSRVAEEGDR
RVVIVDGQWQTRDRDYDYAHTHNHIRNQTQSLSLDWEYLTEHFDTLYLSWDPDIFAHSAT
TSFTIATETETETETEAGKRSNPLEKYPRFTVQGGVGEVWVLLTRHIGRSESSQLGDNGD
RSDKTVYSALHTSRHSTSAQNMYTTDRPSDIVQDASHTNSINTLSKQIVKRGMDIGVVVS
QLVDDDCNYKYNYTLTAYASSPLRIANVSDLRAYGYSRRVSGAWTVRTAGGHSSTLSFGV
NPMYVMRIGKCAGGDGCTLRLVLESDRDIAVNVKIVWGTERVFELRGIHIAGDSGVYTHK
LAVMERDQVVSGREYTVVVSAFEAGQLASFTLFADCSAPISLSPLAQEGSGLFAAPDTCG
VVDRPCSDYKLDLPRKSRVRLRIEASSQVEMEVEGVSRCGRIFDSLLDSGIHVVTITGVG
GKEQPYKVKIGMDIAHPISSKPKSVSFGFLTTDEIKKISVKQIVNPNLLDNTGRPTAGGL
YDPALGPSDRGDICATCGLSSFNCPGHFGHIELPTVNYHPLFFNHCFNILRGVCLYCHKF
KLDPAVVARYVAKLALLDYGLLDEAEQVDLIKRGVTDADDEESATKLSKKALKALEKDRE
LDAYKDRVNSWVRFNIHKAHQSGKTRDEYKSGLVYQTRKRLFHQLFKQMYRKKCDNCSAY
AHAFRKEGTIKIIEYSLTPKQEAHHSALNLSRPDVLKEQAAVDKNARDALNEQSTAHTQN
ASSSDGSDDDSSESEGEGDDTHSNPPHSNQDQNNNLDADADEEDDIAALKANNKANAAAL
KRSERVMPASEVQSHLHRLFQNEKPLVSIIFSRHGPFPTSEAMADIFFMSAIPVPPTRFR
PAARMGDALMEHPQNELLGAVLQTSLRIRDYNNEMSALNDKEYAQTMANNSSLGADGVKI
IRDRTYQRLLEELITLQHGVNSFIDSSKNPARLPQGREPTPGVKQVLEKKEGLFRKHMMG
KRVNHAARSVISPDVNIETSEIGVPPVFAKTLTYPEPVTAFNVSYLRKLVINGPKNYPGA
SMIQYEDGRMESLEKKSQEQRTAIANQLLTPSNRPDNQNKMTTRTTSINKKVFRHLRDGD
LLLLNRQPTLHKPSMMAHKAKVLHGERTIRMHYANCKSYNADFDGDEMNMHFAQSAIAKA
EMKFIANNDSQYLVPTSGKPLRGLIQDHVVAGSWMTMKSTFFSRDEYQQLLYGALRPEND
YTGGGRVHLLPPAIWKPKPLWTGKQIISTILQNITPANARGLNLESESKVKAEYLPAWGS
NENKVVILDGVVCSGIIDSSQFGTSSYGLVHSVFELYGSDIAGKLLSILSRLFTKYLQHR
GFTCRMDDLILTDDGNKDRDNILQSTKGYGFEAAIDSIGLTKEQSEGSEGKRNVLMRLEE
VLRDDDKLAMMDQASTSKNEQIKSQILKKTLPNGLWRHFPSNHFQAMVLTGSKGSAVNAS
QISCLLGQQSLEGRRVPVMVSGKTLPCFKPFETDMRAGGFVAQRFLTGIRPQEYYFHCMA
GREGLIDTAVKTARSGYLQRCLIKHLEGIKVHYDHTVRDSDNSVIQFQYGEDALDVTKQV
YLNKYNFAVKNYDSMMRKYNPKALIGKVDEETADTHMKKALKKPYKYAPALSEFSPSVYL
GSTSEKFAKALEEYAENNPDGLLVPQSSKKSKVTDAEIEILTKKLKQQGGAIAKPKQFKN
LLKTVYARSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMT
ASAQIRTPVMKLPVYEHITEDEMKVFCKNLNKLTLAECVDDVRVIESLSSKTPENGFSRR
KTYNVHLKLYDPAEYSKEYNVEPIDISYAIRRFSAILDKEITIELRKVTREQTGSAANIG
RGQKLREKPGENENNEDEDAPVRETQKGDDEVDEGDAESRKRSEKTKEITSYSDEGESDE
EENKKDNEDHVGDSDNESDIQDDSERQRKHSKQLGEKLSQLEDKIVQTSHYMTKLECDRE
GGYVDFELEFSSKALKMLLVGIIEKACRKTVVREVRGISRAILLDKEKNKDGSTKKQRSI
QTEGANLMGIRGFGQDFIDLNQLYCNDIDAIRRTYGVEAARASIINEVAGIFQVYGIGVD
FRHLALLADYMTYDGGYKPFNRTGLSGSPSPLLRASFETTASIIAEAALYGDFDDMKSPA
SSIVMGSVPEVGTGLFNVGIANN
NT seq
7632 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacgacgatgaccgagccgacaaaagattccgagacgcaatccagctggaaaga
gatgggaaatatacggaagcattcagcgagtatgtaaacacagcccagctgtaccttgag
ctacgtcgtcgttgtccttccccagccattgtttccaccgaatccaccaagccgatcgat
accatcaccacgaaataccgccttgtgcttgaacgcgcggagcgtacgaaagaattatgc
aagagcgctaatcccgtcaaccagccccactcggccgtgatcaacgggcgtgtctatccg
cagtggcgggggagtaacggagctaatcacaatcccgctcccctccctctacccgccctc
tccacagcccaactccgacgtggcgcgacataccagcgaatagcacacactgacgcggca
atctacacaatctacacgccagacacacccacacacaccacacacatcacacagcacgat
atcagcgactgctccgtcgtcgcctccctctctgcgtgccactcccacaatggccgcttc
ggcggttgtttgggtgtgagtgcgctgcacccgcacaacgagcacggtctgccgcgcgtg
agcgacgagggagtgtacgagatacgtttctatctcaatggcgcgtggcggtgtgtcgcc
gtcgatgaccgcctcccccaaaccccccaaggcgatttagttgctgtggaggtggtagca
gacgctgcagcacaaggtatagcacacccagtagcagcggttaggacacagatatggccg
gcactactcgaaaaagccatcatgagtctgtggggaacgtatgaatttagcgggagtgat
tcatcaactgatctgcagatgattacgggttggatacctgagcaaatcaagtttaatagt
tctctgttcaagcaggagaagacgtggaggcgcgtgctcgatggcagcaatagcggtatc
tgtctcttaactctaggcagcaagagcaggagcgctgatatggcgcagagcctcctcgat
caaggtttcgtagagaatcacgcttatgctgttagtagagtagcagaagagggcgacagg
agggtggtgattgttgatggacagtggcagacgcgggatcgcgattatgattatgctcac
actcacaatcacattcggaatcaaactcaatcgctctccctcgactgggaatacctcacc
gagcacttcgacaccctctatctgtcatgggatccggacatcttcgcccactctgccaca
acgtctttcactattgcaactgagactgagactgagactgagactgaggcaggtaagcgg
agcaacccactcgaaaagtaccctcgtttcactgttcagggtggagtgggggaggtgtgg
gtgttgttgacgcgtcacattggcaggagcgaaagtagccaacttggcgacaacggtgat
cgcagcgacaaaaccgtctactccgccctccacacctcgcgacacagtacgagtgcgcag
aatatgtacaccaccgacagacccagcgacattgtccaagacgccagccacaccaacagc
atcaacacactctcgaaacaaatcgtcaagcgcggtatggacattggggtggtagtgtcg
cagttagtggatgacgattgcaactacaaatacaactacacactcacagcttacgcttcg
tctccgctacgtattgcgaatgtgtccgatttgcgcgcctacggctattcgcggagggtt
tctggcgcttggacagtccgcacggccggtgggcacagctcgacgctttctttcggcgtt
aacccgatgtatgttatgcgcattggtaagtgtgctggcggtgatggatgtacacttcgc
cttgtcctcgaaagcgatagggatatagcggtgaatgtgaagatagtgtgggggacagag
cgggtgtttgagttgagggggattcacatagcgggggattccggagtttatacgcacaaa
ttagcagtgatggagagagatcaagtggtgagtgggcgggagtacacggtcgttgtgtcg
gctttcgaggctggccaactcgcttcgttcaccctcttcgctgactgctcagctcccata
tcactttcacccctcgcgcaggaaggttcgggattgtttgccgcaccggatacgtgtggg
gtggtggatagaccatgttcagattataaactggatttacccaggaagagtcgcgttaga
ttgcgcattgaagcaagttcgcaggtggagatggaagtggagggcgttagtcggtgtggg
agaatctttgatagcctcctcgattcaggcatacacgtcgtcactatcacaggcgtagga
gggaaggagcaaccatataaagtgaaaataggcatggacatcgcccatccaatcagctca
aagcccaagagcgtctcctttgggtttttaacgacggacgagataaagaagatttccgtg
aagcagattgtcaacccgaatctgttggataacacgggaagaccgacagctgggggattg
tacgatccagcgctgggaccgtcagatagaggggatatctgcgccacttgcggattaagc
tcattcaattgcccaggacactttggacacatagaactacccactgtcaactaccaccca
ctattcttcaaccactgctttaatattctccgtggcgtgtgtttgtactgccacaaattc
aaacttgatcctgcggtggtcgccagatacgtcgctaaactcgctctcctcgactatggc
ttgctcgatgaggctgagcaagtcgacctcattaagcgtggcgttactgacgctgacgac
gaagaatctgctaccaagctatccaagaaagccctcaaagccctcgaaaaggatcgcgag
cttgacgcgtacaaggatagagtcaatagctgggttaggttcaacattcacaaggctcac
caatctggtaagacaagggatgaatacaagtctggcttggtctaccagactaggaagaga
cttttccaccaactattcaagcagatgtacagaaagaagtgcgacaattgttccgcttac
gctcacgcttttagaaaggaaggcaccattaaaattattgagtattcacttactccgaaa
caagaagctcatcacagcgctctcaacttaagcagacctgatgttctcaaagaacaagct
gctgttgataagaacgcaagagatgctcttaacgaacaatccactgcacacactcaaaac
gctagtagcagcgatggcagtgatgacgacagcagtgagagtgaaggtgagggtgacgac
actcactccaatcctccacactctaatcaagaccaaaacaacaatcttgacgctgacgct
gacgaggaggatgatatagccgctctcaaagcaaataacaaagcaaacgcagctgctctt
aaaagaagtgaaagagtcatgccagcttcagaggttcaaagtcatttgcaccgtctcttc
cagaacgaaaaacctctcgtttcaatcattttctcacgtcatggtcctttccctactagc
gaagctatggccgatatctttttcatgtctgccatccctgttccaccaactcgtttcaga
cctgctgcacgtatgggcgatgctctgatggaacaccctcaaaatgagcttctcggtgct
gtccttcaaacttctttgagaattcgcgactacaataatgaaatgtcggcacttaacgac
aaagagtatgctcagactatggccaacaacagtagcctcggtgccgatggtgttaaaatt
atcagagatagaacctaccagagactccttgaagaactcatcaccctccaacacggcgta
aactcatttatagactcgtcaaagaatcccgcacgtcttccgcaaggtcgcgaaccaaca
cctggtgtcaagcaagtactcgagaagaaagaaggtcttttcagaaagcacatgatgggt
aaacgtgttaaccacgccgctagatcggtcatctctccagatgtcaacattgagacgagt
gaaatcggtgttccacctgtattcgcaaaaactctcacctaccctgagccagtaaccgca
tttaatgtgtcttaccttcgcaaactcgtgattaatggtccaaagaactatccaggagcc
agcatgattcagtacgaagacggcagaatggagagtctcgagaagaagtctcaagagcag
aggacagcaatcgcaaaccaacttctcaccccatccaacagaccagataatcaaaataag
atgacaacacgtactacgtctataaacaagaaggtctttaggcacctgagagatggtgac
cttttactgctcaaccgtcaaccaactctccacaaaccttctatgatggctcacaaagca
aaagttttgcacggcgagagaactattagaatgcactacgctaactgcaaatcctacaat
gctgacttcgacggtgacgagatgaatatgcactttgctcaatcagccatagccaaagct
gaaatgaagtttattgcaaacaacgacagtcagtatttggtacctacttcaggtaaacct
ttgcgtggtctcattcaggatcacgtcgttgctggtagttggatgactatgaagtcgacc
ttcttttcgagagatgaataccagcaactactctatggtgcactcagaccagagaatgac
tatactggcggtggtcgtgttcatctcctcccaccggctatttggaaacctaagccattg
tggactggtaaacaaatcatctctacaattttacagaatatcactccagctaacgctcgt
ggtctcaaccttgaatctgagtcgaaagttaaagctgagtatttgccagcttggggatcg
aatgagaacaaagttgttattttggatggtgtagtttgctcaggtatcattgatagctct
caattcggtacatcctcatatggtcttgttcactcagtttttgagttgtatggatcagat
atcgctggtaaattactctccatcctttcaagacttttcactaagtacctccaacatcgt
ggtttcacttgtagaatggatgatttgatcttgacggacgatggtaacaaggatcgtgac
aacatacttcaaagtaccaagggatatggatttgaagcggccattgactctattggattg
accaaagagcaatctgaaggatctgaaggtaaacgtaatgtcctgatgcgtttggaggag
gttttgcgtgatgatgataaattggccatgatggaccaggcatctacatccaagaatgaa
caaatcaagtcacagattcttaaaaagacgttacctaacggactttggagacacttccca
tctaaccacttccaagccatggttcttacaggttccaagggatctgcggtcaacgcttct
caaatttcttgtctgttgggtcaacagtcacttgaaggtcgtcgtgtaccagtcatggta
tcaggaaaaactcttccttgtttcaagccattcgaaactgatatgagagctggtggtttc
gtagctcaacgtttcttgactggtatcagaccacaagagtactacttccactgtatggct
ggtagagaaggtctgattgataccgctgtcaagactgcaagatctggatacttgcagaga
tgtttgattaagcatttggagggtatcaaggtgcactatgatcatactgttagagattcc
gataacagtgttattcaattccaatacggtgaggatgcactcgatgttactaagcaagtt
taccttaataagtacaactttgctgtgaagaactacgacagtatgatgaggaagtacaat
ccaaaggcactgattggcaaggttgatgaggaaactgctgacacacacatgaagaaggcc
ctcaagaagccatacaaatatgcgccagcattgtcagaattttctccttcagtttatctc
ggttctacctcggagaagttcgcaaaagcattggaagagtacgctgagaacaatccagat
ggtctacttgttccacaatcatcaaagaagagcaaggtaaccgatgctgagattgagatt
ctcaccaagaaactcaagcagcagggtggtgctattgccaaacctaagcaattcaagaat
ctcttgaagactgtctacgctcgtagtttagtagaacctggtgaagccgttggtttgttg
gcctctcaaggtgttggtgagccttcaactcaaatgacgttgaacacattccactttgct
ggtcacggtgccgctaatgttactcttggtattcctcgtcttcgtgagattgtcatgacg
gcgtcagctcaaatcaggaccccagtgatgaagttacctgtttacgaacacatcactgaa
gatgagatgaaggtgttttgtaagaacctcaacaagctgactcttgcggagtgtgtagat
gatgtaagggtaattgagtcgctctcttcaaagacgccagagaatggcttctctagacgc
aagacatataacgtccacctcaagctttacgatcctgctgagtacagtaaagagtataac
gtagagccaatcgatattagctacgcaatcagaagattttcggccattttggataaggag
atcactatcgaattgcgtaaggtgactagagaacaaacaggctcagctgccaatatcggc
agaggacagaaattgagagaaaagccgggtgagaatgaaaacaacgaggatgaagacgca
cctgtgagagaaacgcagaaaggagatgatgaagttgatgaaggagatgctgagtcacgc
aagcgttctgagaagactaaggagataacatcatactctgatgaaggcgagtcagatgaa
gaagagaacaagaaggataacgaagatcacgtgggtgattcagacaatgaatctgatata
caagatgatagtgagcgtcaacgcaaacactcaaaacagctcggtgagaagctttcacaa
cttgaggataagattgttcaaacttctcactacatgactaagctagagtgtgaccgtgag
ggtggatatgtcgactttgagttagagtttagcagtaaggcacttaagatgttgcttgtc
ggtattatcgagaaggcttgtcgtaagactgttgttcgtgaagtccgtggtatctctaga
gcgattctccttgataaggagaagaacaaggatggtagcaccaagaagcaaagatcgata
caaactgaaggtgcaaaccttatgggtatcagaggatttggacaagactttatcgatctc
aatcagctctactgcaacgacattgatgcaattagacgtacttatggtgtggaagctgct
cgtgcatctatcattaatgaagttgctggtattttccaagtctatggtatcggtgttgac
tttagacacttggcgctgttggctgattacatgacatatgatggaggatacaagccattt
aataggactggattatctggctcaccaagtccactgctgcgtgcatctttcgagacgaca
gcgtctattatcgcagaagcagcgttgtatggtgactttgacgatatgaagtcaccagcg
tcatctatagtaatgggatcggtaccagaagttggaactggattatttaacgttggaatt
gcgaacaactga
DBGET
integrated database retrieval system
