Weissella koreensis: WKK_04215
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Entry
WKK_04215 CDS
T01577
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
wko
Weissella koreensis
Pathway
wko03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wko00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WKK_04215 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wko03021
]
WKK_04215 (rpoB)
03400 DNA repair and recombination proteins [BR:
wko03400
]
WKK_04215 (rpoB)
Enzymes [BR:
wko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WKK_04215 (rpoB)
Transcription machinery [BR:
wko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WKK_04215 (rpoB)
DNA repair and recombination proteins [BR:
wko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WKK_04215 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEJ23716
LinkDB
All DBs
Position
878992..882570
Genome browser
AA seq
1192 aa
AA seq
DB search
MAEHHLVKYGKHRVRRSYARIKEVLDLPNLIAIQKDSYDWFMDEGLSEIFNDILPIEDYQ
GKLTLEFVDYRLKDEKYSVEEARMHDANYSAPLEVTLRLTNHETGEIQEDVVFFGDFPKM
TPSGTFIINGAERVIVSQLVRSPGVYYNVENDKNGRPRYGTTYIPSRGAWLEYETDAKGL
SYVRIDRTRKLPVTELVRALGYGSDHEVLQILGDQYDSINLTLEKDVHKVMEDSRVEEAL
KDIFEKLRPGEPTTVDASRNLLVARFFDPKRYDLAPVGRYKINKKLAMENRLLGLTLAET
LADPETGEVIAPKGTVVDKKVLGQLKPYLQNPDFKTTTYTPSDDAVVNTPMTLQTILVMD
PNDPEKNLPIIGNGQIDPKVRTIQPADIIAGMNYFLNLSYGIGNVDDIDHLGNRRIRRVG
ELLQNTFRIGLTRMERVVRERMTTLDPETVKPQQLINIRPVVASVKEFFGSSQLSQFMDQ
TNPLGELTNKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMDPIETPEGPNIGLINSLAT
YGKVNKYGFIETPYRRVSWSDHKVTDRIDFLTADEEDNFTVAQGNSVLNEDGSFATDTVL
ARRGDENLEVSIDQVDYMDVSPKQIVAVATAAIPFLENDDSNRALMGANMQRQAVPLIKP
HAPLIGTGIEYKAAHDAGVAMIASNAGTVEYVDGREIRIRREDGSLDNYKLMKFRRSNAG
KNYNQRPIVSVGDHVDVDEVIADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIIINERL
IRDDVYTSIHIEEYESEARDTKLGPEEFTREIPNTGEDQLKNLDEDGTIRIGAEVEDGDI
LVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKVPHGGGGVVQDVRVFTRENGDEL
APGVNRMVRVYIAQRRKIQVGDKMAGRHGNKGTVSVIVPSEDMPYMPDGTPIDIMLSPMG
VPSRMNIGQVLELHLGMAARELGIHIASPVFDGARDSDIWEAVKEAGLPADGKSVLYDGR
TGEAFDKRVSVGIMHYMKLAHMSEDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAHTLQEILTYKSDDVIGRVKTYEAIVKGEQIPKPGVPESFRVLVKELQSLGLD
MKVLDINHQEIELRDMDEDDTVVNIEVATAQAQRLAKEFADEGDKKDVPAAD
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
ttggcagaacatcatttagttaagtatggtaagcaccgagtacgtcgttcgtacgcacgg
attaaagaagtcttggacttgccaaatttgattgcaattcaaaaagattcctatgactgg
tttatggatgaaggattgagtgagatatttaacgatattttgccaattgaagactatcaa
ggtaagttaacccttgaattcgttgactacagattaaaggatgaaaaatatagtgttgaa
gaagctcgtatgcacgatgctaattattcagcacccttagaagttacgcttcgtttaaca
aatcatgaaacgggagaaattcaagaagatgttgtcttctttggtgatttcccaaagatg
acgccaagtggaaccttcattattaatggagcagagcgagtaatcgtttcacaacttgtg
cgttcaccgggtgtttattacaacgttgaaaatgataaaaacggacgtcctcgttatgga
actacttatattccatcacgtggtgcttggttggaatatgaaaccgatgccaagggactt
agctatgttcgaattgaccgaacacgtaagttgccagttactgaattagtacgagcattg
ggttatggatcagaccatgaagttttgcaaatcttaggagatcaatatgattcaatcaat
ttgactcttgaaaaagatgtgcacaaagttatggaagattcacgagttgaagaagctttg
aaggacatctttgaaaagttgcgtccaggagagccaacgacggttgatgcgtcacgaaat
cttttggttgctcgtttctttgatccaaagcgttatgatttggctccagttggtcgttat
aaaatcaacaaaaagttggctatggagaaccgtttgctcggtttgactttggcagaaact
ttggcagatcctgaaactggtgaagtaattgcgccaaagggaacggttgttgataagaag
gtcttaggacaattgaagccttatcttcaaaatcctgatttcaagactacaacttataca
ccatctgatgatgctgttgtaaacacaccaatgactttgcaaacaattttggtaatggat
ccaaatgatcctgaaaagaacttgccaattattggaaatggtcaaattgatccaaaggtt
cgaactattcaaccagctgatatcatcgctggaatgaattatttcttaaacctttcatat
ggaattggaaacgttgacgatattgatcacttgggaaatcgtcgtattcgtcgagttgga
gaattgctccaaaacactttccgaatcggtttgacccgtatggaacgtgttgttcgtgaa
cgaatgactactttggatcctgaaacagtgaagccacaacaattgattaatattcgtcca
gtggttgcttcagttaaggaattcttcggttcatcacaactttcacagttcatggaccaa
acaaatcctttgggtgaattgaccaacaagcgtcgtctatcagcccttggacctggtggt
ttgactcgtgatcgtgctggatatgaagttcgagacgtgcattatacgcactatggtcga
atggatccaatcgaaacgcctgaaggacctaacattgggttgatcaattctttggcaacc
tatggaaaagttaataaatatggatttattgaaactccataccgtcgtgtttcatggtct
gatcacaaagttacagaccgtattgacttcttgacggccgatgaagaagataatttcacc
gtagcacaaggaaactcagttttgaatgaagatggttcattcgctactgacactgttttg
gctcgtcgtggggatgaaaacttggaagtttcaattgaccaagtcgattacatggacgtt
tcacctaaacaaattgtagccgtagccactgctgcgatcccattcttggaaaacgatgac
tcaaatcgtgccttgatgggagccaacatgcaacgtcaagctgtgcctttgatcaagccc
catgctccattaattggaactggaattgaatataaggccgcccatgacgcgggtgttgca
atgatcgcaagtaacgccggaacagttgaatatgttgatggtcgcgaaattcggattcgt
cgtgaagatggttcactagataactataagttgatgaagttccgtcgttcaaacgccgga
aagaattataaccaacgtccaatcgttagtgttggagatcatgttgatgttgatgaagtt
attgctgacggtccttcaatggaacaaggtgaactagctttgggacaaaatccattgatc
gcctttatgacttggcaaggatataactttgaggatgccatcattattaacgaacgtttg
attcgtgatgatgtctatacttcaattcacattgaggaatatgaatcagaggctcgtgat
acaaaacttggccctgaagaattcacacgtgaaattccaaatactggtgaagaccaattg
aagaatttggatgaagatggaactatccgtattggagctgaagtagaagatggtgacatc
ttggttggaaaagttacaccaaagggtgtaacagaactttcagctgaagaacgtttgttg
catgccatcttcggtgagaaggctcgagaagtacgtgatacttcattgaaggttccacac
ggtgggggcggagttgttcaagacgtccgagtcttcacacgtgaaaacggagatgaattg
gcccctggtgttaaccggatggttcgtgtttatatcgctcaacgtcgtaagattcaagtt
ggtgataagatggccggtcgtcacggaaacaagggaacagtttcagtaattgttccttca
gaagacatgccatacatgccagatggaacaccaattgacattatgttgtcaccaatgggt
gtgccttcacgtatgaacattggacaagttttggaacttcacttaggtatggctgctcgt
gaattgggtatccatattgcttcacctgtctttgacggggcgcgtgactcagatatttgg
gaagccgtaaaggaagccggattaccagctgatggaaagtcagttttgtatgatggtcgt
actggagaagcctttgataagcgtgtttctgttggaatcatgcattatatgaagttagcg
cacatgtcagaagataagatccacgcacgttcaatcggcccttactcattggttacacaa
caacctttgggtggtaaggctcaatttggaggacagcgtttcggagaaatggaagtttgg
gcccttgaagcttatggggcagcacatactttgcaagaaattttgacttataagtccgac
gacgttattggtcgtgttaagacttatgaagctattgttaagggtgaacaaattcctaag
cctggagtgccagaatcattccgtgtgttggtgaaagaattacaatcacttggtttggat
atgaaggttcttgatataaatcatcaagaaatcgagttgcgggatatggatgaggatgac
acagtcgtcaacattgaagttgcaacagcacaagctcaacgtttagcaaaggaatttgca
gatgagggcgacaaaaaagacgtcccagcagcagattaa
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