Wallemia mellicola: WALSEDRAFT_31844
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Entry
WALSEDRAFT_31844 CDS
T03142
Name
(RefSeq) hypothetical protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
wse
Wallemia mellicola
Pathway
wse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WALSEDRAFT_31844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wse03019
]
WALSEDRAFT_31844
Enzymes [BR:
wse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
WALSEDRAFT_31844
Messenger RNA biogenesis [BR:
wse03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
WALSEDRAFT_31844
mRNA degradation factors
3'-5' decay
Pan complex
WALSEDRAFT_31844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
RNase_T
PAN2_N
WD40_CDC20-Fz
UCH
WD40
Beta-prop_EML_2
Beta-prop_WDR3_1st
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_WDHD1_1st
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
18471377
NCBI-ProteinID:
XP_006957305
JGI:
Walse1_31844
UniProt:
I4YF97
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MAHRNSPVKELCLDDRGIVTLGLNGVKGTKRSAIGKWMVEEPRSSLEAMSMSPGSSEVVA
GGNQLDLLVLNTNSGSLVRKIEVPEPIRFLKPGPRSSVVCGDVSGNVQIRDTRVSKAAMQ
HIQPHKDGLLGIESTGNILLSWGCTTRFGRVVPEPLVKVYDARMMRPLPPVSFPSGPSFV
KIHPRVSTSVFISDLQGQFHVTDLSTSTGTYHMLDISSYVTSMAVSTTGNHLAFGDADGS
IHIWTDLEPGQPENFNAFEGIQLDWPSEVQTPPRIDWNDRTPLNSIGLPYYDTPLLSSMP
LHMPLPDSSPMFNPPTPIPISVMKGLRTDIFPAHAQNPPENKGKRNLTPSRKAGRSGRNR
IGGRQSDEPKFISEQIRDNLKNGGVNNRPRLESRVENLELDISDVANMPKHYRKVEIKYS
KFGIEDFDFGFYNKTPYSGLETHIANSYTNALLQILHHIKPIRAVATSQTTLPDLKDNCL
LTESGFLFRMLENGKGVNCQSANFSRALSSFPQAKALGILDADISGNHNAPYGNMIQSFN
RFLLEQMSVESWTFQPSPQICNNGNMSPISQLLGIESLSVSMCTDGCGSRSVRKGVTHVI
EFMYPRKTLSNEVPLPVDFGSILCASIIRDTLTKHVCPVTKQFVPLHSRRIVSTFDSQFP
AVLSINAGVHSKENLDIWLNPARRPGESPYNPKPEYFLPFEFGIKRTSDNVQVVTDQDKY
DGDMAIYSLKAVIAQIYPDHDSNHLVSIVKISDDELDDNSKSPWYIFNDFLVRNVSPVEA
LSFSEWKIPSVIYYERKNVDKCVNFTALNQKIDPTILCHDLSISWNRDPKLIKHQVLSEE
ELPKPGSLVAIDAEFVSMDREEIEFRSDGSRSVIKPSKLSLARVSVLRGEGDLDQKPFID
DYIHTSEPVVDYLTEFSGIIHGDLEPSTSRHTLVPLKAAYRKLRLLVDMGCIFIGHGLSQ
DFRIINLFVPRNQIIDTVALYQKKDSHRKLSLRFLSWFLLKQDIQLDTHDSIEDARAALL
LYKMYKAFEKDGRLEDVLDDIYSEGRRLNWRPPANATTTTNNQISTTPTPTPYEVKIPPQ
QQSQAAATGSFATIPTIFPSVSQVVSSGIPSQNSFPIVQSTAPIFNNERQAHRDPWH
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaggaatagccccgtaaaggagttgtgtctcgacgataggggtatcgttact
ttaggcttgaatggcgtgaaaggtacaaagagatcagctatcggtaaatggatggtagag
gaaccaaggtctagcttggaagctatgtctatgtcccctggttcatcggaagtcgttgct
ggtggtaatcagctcgatttgctagtcttaaataccaactcaggtagtttggttagaaaa
attgaagtaccagaacctattcgtttccttaagcctggtcctcgttcttctgtcgtttgt
ggtgatgtcagcggtaatgtccaaataagagatactagggtatcaaaggcagccatgcag
cacatccaacctcataaagatggtttactcggtatagaatccactggtaatatccttctc
agttggggttgtacaactagatttggcagagtcgttcccgaaccacttgtaaaagtttac
gacgcgagaatgatgcgtcctttgccaccagtctcattcccaagtggtccgtctttcgtc
aagatacatccacgtgtatcgacttcagtctttatatcggatttacaaggtcagttccac
gtcacagatcttagtacatcaactggaacttatcatatgctcgatatatcctcatatgtg
acatcgatggctgtttcgactactggtaaccatctagcttttggtgatgcagacggctca
attcatatctggacagatcttgaaccgggtcaacctgaaaatttcaacgctttcgaaggt
atacagctggattggccgtcagaggtacaaaccccaccacgtatagattggaatgataga
acacctcttaatagtattggcttaccatattatgacacaccattgttgtcttcaatgccg
ttacatatgcccctaccagattcatctcctatgttcaacccaccaactccaataccaata
tctgtcatgaaaggattacgaaccgatatatttccagcccatgctcagaatccaccagaa
aataagggtaaacgcaatctcacaccctctcgaaaagcaggtagaagcggtaggaatagg
attggtggtcgtcaatctgatgaaccaaaatttatttctgaacagattagagataatctt
aagaatggtggtgtcaataaccgtcctcgtttggaatcacgtgttgaaaaccttgagttg
gacataagcgacgttgcaaatatgccaaagcattatcgcaaagttgaaataaaatactcc
aaattcggtatagaagatttcgattttggcttctacaacaaaacaccatattctggatta
gaaacacacatagcaaattcatatactaatgcattacttcaaatacttcatcatataaaa
ccaattagggctgtcgctacatcacaaacaactttaccagatctaaaggataattgttta
ttgaccgaatctggctttttgtttaggatgttagaaaatggaaaaggtgtcaattgtcaa
tctgccaacttctctagagcattatcgagtttcccacaggcaaaagctttaggcattctg
gacgctgatataagtggaaatcataacgctccttatggaaacatgattcaaagtttcaat
aggttcttacttgaacaaatgtcagtcgaaagctggacatttcagcctagtcctcagatc
tgcaataatggaaatatgagtcctatatctcaacttttgggcatagagtctttatctgtc
tcaatgtgtaccgatggatgtggatcacgttcagtgagaaagggtgtcactcacgtcatt
gaattcatgtatccaaggaagacattatcgaatgaagtaccattaccggtagactttggt
tccatactttgcgcctcaatcatacgcgacactctaacgaaacatgtttgtccagttacg
aaacaattcgtaccattacactcgcgccgcatagtctcaacatttgattcacaattccct
gcagttttgtcaataaacgctggtgtacattccaaggagaacttggacatttggctcaat
cctgctagaagaccaggagagtcaccatataatccaaaacctgaatactttttaccattt
gaatttggtattaaaagaacaagcgataatgttcaagttgttactgatcaagataaatat
gatggtgatatggctatttacagtttaaaggctgttattgcacaaatatatccagatcac
gactccaatcatcttgtttcaattgtcaaaatatcagatgatgaattggatgataattct
aagagtccttggtatatatttaatgacttcctcgttcgcaacgttagtccagtcgaagct
ctctctttctctgagtggaaaattccatctgtcatctattacgaaaggaagaacgtagac
aagtgtgtcaatttcactgcacttaaccagaagattgatccaactattctttgtcatgac
ttgtctatctcttggaaccgtgatcctaaacttatcaagcatcaggttttgagcgaagaa
gaattaccaaaacccggttctcttgttgctatcgatgcagaatttgtttcaatggataga
gaagaaatagaatttagatcggatgggtcaagatctgtcataaaaccgtcgaaactatca
ctagctcgtgtttcagttttgagaggagaaggagatctggatcaaaaaccgttcattgat
gactacatacatacaagtgaaccagttgttgattacttgaccgagttctctggtattata
catggtgaccttgagcctagtacttcaagacacacacttgttcctctcaaagcagcttat
cgcaagcttcggttgctagtcgacatgggatgtatatttattgggcatggtttatcccaa
gactttagaattataaacttgtttgttccacgcaatcagataatagataccgtggcactg
taccaaaagaaagacagtcataggaagctatcattaagatttctcagttggttccttctc
aagcaagatatacaactagacacacacgactctattgaagatgcaagagccgcgttactt
ttatacaaaatgtataaagcatttgaaaaggacggtagattggaagacgttttagatgac
atatacagcgaaggaagaagattgaattggagaccacctgcaaatgcaacaaccacaacg
aacaaccagatatcaacaacaccgacaccgacaccgtatgaagttaaaatcccaccacag
caacaaagtcaggccgctgctacaggatcatttgctaccatacctacaattttcccttct
gtcagtcaggtagtaagctctggaataccatcgcaaaattcattcccgatcgtacagtca
acagcacctatatttaataatgaaagacaagcacatagggatccatggcattaa
DBGET
integrated database retrieval system
