Xanthomonas albilineans: XALC_2066
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Entry
XALC_2066 CDS
T01160
Symbol
mfd
Name
(GenBank) probable transcription-repair coupling factor protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XALC_2066 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xal03400
]
XALC_2066 (mfd)
Enzymes [BR:
xal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XALC_2066 (mfd)
DNA repair and recombination proteins [BR:
xal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XALC_2066 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CBA16550
UniProt:
D2UEH6
LinkDB
All DBs
Position
2430266..2433766
Genome browser
AA seq
1166 aa
AA seq
DB search
MPSISFPVPPLPKSGQLRAHWRAPASSTALAWHIACAAAAHRGPLLVIARDNHSAHQIEG
DLHTLLGGDTPLPVVPFPDWETLPYDQFSPHPDIVSQRLAALQRLPTLQQGIVVVPVQTL
MQRVAPLRYIVGGSFDLRVGQRLDLDAEKRRLESASYRHVPQVMDPGDFAVRGGLLDVYP
MGADAPLRIELLDDDIDSIRAFDPESQRSLDHVDTVQILPGREVPMDDASVERVLTTLRE
RFDVDTRRSALYQDLKARLAPSGIEYYLPLFFQESRGTGASARDTTATLFDYLGERVLPL
IAPGVGAAADAFWAQTQARYEQRRHDVERPLLVPEELYQTPDTLRERLNTLARIEVRAAD
HPRIDEAQTLGDQPLPPLPVAAKDAAPAAALKQFLEHYQGRVLIAADSPGRREALLEVLA
AADLKPQVLADFAAFAATTGPAFAIAVAPLDGGFALEQPRIAVLTERQLFPERASQPRRS
RRVGREPEAIIRDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLY
VPVAQLHLISRYSGASAETAPLHSLGGEQWAKAKRKAAEKVRDVAAELLEIQARRQARAG
LALQVDRAMYEPFAAGFPFEETPDQLAAIEATLRDLASSQPMDRVVCGDVGFGKTEVAVR
AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVA
AGTIDVIVGTHRLLQADVRFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIP
RTLNMAMAGLRDLSIIATPPLNRLAVQTFVTQWDNALLREAFQRELARGGQLYFLHNDVE
SIGRMQRELSVLVPEARIGIAHGQMPERELETVMLDFQKQRFNVLLSTTIIESGIDIPNA
NTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLLVPDQRSITADAQKRLDAIASMDELG
AGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDSGENT
RGAEVELHVPALIPDDYLPDVHTRLTLYKRISSARDGDGLRELQVEMIDRFGLLPEPVKH
LFAIAELKLQANALGIRKLELGEHGGRLVFESKPNIDPMTILQMIQKQPKLYAMDGPDKL
KLKLPLPESSERFNAARGLLTALSPR
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctatttccttccccgttccgccgctgcccaagtccggtcagctccgcgcgcac
tggcgcgcacccgcctcctccaccgcgctggcctggcacatcgcctgcgccgccgccgcg
catcgcggaccattactggtgatcgcgcgcgacaaccacagtgcacaccagatcgagggc
gacctgcataccctgctaggcggcgacacgcctctgccagtggtgccatttcccgactgg
gagaccctgccctacgaccagttcagcccgcatccggacatcgtcagccaacgcctggcg
gcgctgcaacgattgccgaccctgcaacagggcatcgtcgtggtgccggtacagacgctg
atgcagcgggtggcgccactgcgctacatcgtcggcggcagtttcgacctgcgcgtgggc
caacgcctggatctggacgcggaaaagcgacggcttgaaagcgccagctatcgccacgtg
ccgcaggtcatggatccgggcgacttcgccgtgcgcggcggtttgctcgacgtctacccg
atgggcgccgacgcaccgctgcgcatcgaactgctggacgatgacatcgattcgatccgc
gcattcgacccggaatcgcagcgctccctagaccacgtggatacggtgcagatcttgccc
gggcgcgaagtaccgatggacgatgccagcgtggagcgggtgctgaccacgctacgcgag
cgtttcgacgtggacacccggcgcagcgcactctaccaagacctgaaagcgcggctggca
ccgtcgggcatcgaatactacctgccgctgttcttccaggaatcgcgcggcaccggcgca
agcgcacgcgataccaccgccaccctgttcgactacctgggcgagcgcgtgctgccgttg
atcgcaccaggagtgggtgccgctgccgatgcattctgggcgcagacccaggcacgctac
gaacaacgccgccacgacgtggaacggccactccttgtccccgaggagctgtaccagacg
ccggacacactgcgcgaacggctcaacacgctggcgcgcatcgaggtgcgcgcggcagac
catccgcgcatcgacgaggcgcagacgctgggcgaccaaccgctaccgccgctgccggtg
gccgccaaggacgccgcgccggccgcagcgctgaagcagttcctcgaacattaccaaggg
cgcgtgctgatcgccgccgattcgcccggccgacgcgaagcgctgctggaagtgctggcc
gccgctgatctaaagccgcaggtgctggccgacttcgccgcgttcgccgccacgaccggc
cccgccttcgccatcgcggtggcaccgctggacggcggcttcgcgctggagcagccgcgc
atcgcggtcctgaccgaacgccaactcttccccgagcgcgccagccaaccgcggcgcagc
cgccgtgtcgggcgcgagccggaagcgatcatccgcgacctcggcgagctgtccgaaggc
gcaccgatcgtgcacgaggaccacggcgtgggtcgctaccgtgggctgatcgtgctcgac
gccggcggcatgcccggcgagtttctggaaatcgaatacgccaagggcgaccggctgtac
gtgccggtggcccagctgcatctgatcagccgctactccggcgcctcggccgagaccgcg
ccgttgcattcgctgggcggcgagcagtgggccaaagccaaacgcaaagccgccgaaaag
gtccgcgacgtcgccgccgaactgctggaaatccaggcgcggcgccaagcccgcgcaggt
ctggcactacaagtggaccgcgcgatgtacgagccgttcgccgccggcttcccattcgaa
gaaacccccgaccagttggccgccatcgaagccactctgcgcgacctggccagcagccag
ccgatggaccgcgtggtctgcggcgacgtcggcttcggcaagaccgaggtcgcggtgcgt
gccgctttcgctgcggccagcgccggcaaacaggtcgcggtactggtgccgaccacactg
ctcgccgaacagcattaccgcaactttcgcgaccgttttgctgactatccactcaaggtc
gaagtgctgtcgcgcttcaagagcactaaagaaatcaaggccgagttggagaaagtcgcc
gccggcaccatcgacgtgatcgtcggcacccatcgcctgttgcaagcggacgtcaggttc
aaggatctaggcctggtcatcgtcgatgaagagcaacgcttcggcgtgcgccagaaggaa
gcgctgaaggcactgcgcgccaacgtacacctgctgaccctgactgccacgccaatcccg
cgcacactgaacatggccatggccggcctgcgcgatctatcgatcatcgccaccccgccg
ctgaatcggctagcggtgcagaccttcgtcactcagtgggacaacgcgctgctgcgcgaa
gccttccagcgcgagttggcgcgcggcggccagttgtacttcctgcacaacgacgtggaa
agcatcgggcgcatgcagcgcgaattgagcgtgctggtgccggaggcgcgcatcggtatc
gcccacgggcagatgcccgaacgcgaactggaaaccgtcatgctggacttccagaaacag
cgcttcaacgtgttgttgtcgaccaccatcatcgaatcgggcatcgacatccccaacgcc
aacaccatcgtcatcaaccgcgctgaccgtttcggcctggcgcaattgcaccaattgcgc
ggtcgcgtcggtcgctcgcaccatcgcgcctacgcctacctgctagtaccagatcaacgc
agcatcactgccgatgcacaaaagcgcttggacgcgatcgcttcgatggacgaactcggc
gccggtttcaccctggccacccacgatttggaaatccgtggtgccggcgaattgctcggc
gaagaccagagcgggcagatggccgaagtcggcttcagcctgtacaccgaactgctggaa
cgcgcggtgcgcagcatccgccagggcaagctgccggatctggacagcggcgagaacacg
cgcggcgccgaagtggaactgcacgtgccggcattgatcccggacgactacctgcccgac
gtacacacccgcctgaccctgtacaagcgcatctccagcgcccgcgatggcgatggcctg
cgtgaactgcaggtggaaatgatcgaccgcttcggcctgttaccagagccggtgaagcat
ctgttcgcgatcgccgaactgaaactgcaagccaatgcgctgggcatccgcaaactggaa
ttgggcgaacacggtgggcggctggtgttcgagagcaagcccaacatcgatccgatgacc
atcctgcaaatgatccaaaaacagcccaagctgtacgcgatggacggcccggacaagttg
aagctcaaactgccgctaccggagtcgagcgagcgcttcaatgccgcgcgcggcttgctg
acggcactgtcgccgcgctga
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