Xanthomonas arboricola: XB05_10320
Help
Entry
XB05_10320 CDS
T06096
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xar
Xanthomonas arboricola
Pathway
xar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XB05_10320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xar03019
]
XB05_10320
03400 DNA repair and recombination proteins [BR:
xar03400
]
XB05_10320
Enzymes [BR:
xar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XB05_10320
Messenger RNA biogenesis [BR:
xar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XB05_10320
DNA repair and recombination proteins [BR:
xar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XB05_10320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKC79093
LinkDB
All DBs
Position
2437548..2439344
Genome browser
AA seq
598 aa
AA seq
DB search
MSSPAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERLLT
QRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMALTATADPPT
QREIAERLDLVDARHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRHRGSAGIVYAMSRRK
VEETAQYLCSQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMGIDKPDVRFV
AHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLIDILRGSENERIKQLGHDQLSTYGIGRDLDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKSERQVMMRRENPAAGRERSAQRTGLPVQPQDLVLFNALRGLRAE
LAKEQNVPAFVIFHDSTLRNIAEQRPTSIDALSRVGGIGGGKLARYGAQLIEIVREQG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccccgcccacgaactgctcagccgcgtcttcggttacgacgacttccgcggc
ccacagcaagccattgtcgaacacgtcgctgcgggtaacgatgccctggtgctgatgccc
accggtggcggcaagtcgctgtgctaccaggtgccggcgctgttgcgcgacggcatcggc
atcgtggtctcgccgctgatcgcgctgatgcaggaccaggtcgaggccttgcgccagctc
ggcgtgcgcgccgaattcctcaactccacgctggacgcggagaacgcccagcgggtcgaa
cgtgccctgctgtcgggcgatctggacctgctctacgtcgccccggagcgcctgctgacc
cagcgcttcctgtccttgctggaacgcagccgcatcgcgctgttcgccatcgacgaggcg
cattgcgtctcgcaatggggccacgatttccgccccgaataccgccagctcacggtgctg
cacgaacgctggccgcatatcccgcgcatggcgctgaccgctaccgccgatccgccgacc
cagcgcgagatcgccgaacgcctggacctggtcgacgcgcgccacttcgtcagctccttc
gaccgccccaacatccgttacaccgtggtgcagaaggacaacgcgcgcaagcagctgcag
gagttcctgggccgccaccgcggctctgccggcatcgtctatgcgatgtcgcggcgcaag
gtcgaggagaccgcgcagtatctgtgctcgcagggattcaacgccctgccctaccacgcc
ggcctgcccgccgaggtgcgcgcggaaaaccagcgccgcttcctgcgcgaggacggcatc
atcatggccgccacgatcgccttcggcatgggtatcgacaagccggacgtgcgcttcgtg
gcgcatgtggacctgcccaaatcgctggaaggctactaccaggaaaccggccgcgccggc
cgcgatggcgaccccgccgaggcctggctctgctatggcctgggcgatgtggtgctgctc
aagcagatgatcgaacagggcgaagcggccgaggagcgcaagcggctggagcgcgccaag
ctcgatcacctgctcggctactgcgaatcgatgcaatgccgccgccaggtgctgctggcc
ggcttcggcgagacctatcccaagccctgcggcaactgcgacaactgcctgacgcctgct
gccgcctgggacgccacggtagcctcgcagaaggcgctcagttgcgtgtaccgcagcggg
cagcgcttcggtgtgggccacctgatcgacatcctgcgcggcagcgagaacgagcgcatc
aagcagctcggccacgaccagctgagtacctacggcatcggccgcgacctggacgagcgc
acctggcgcggagtgttccgccagctggtggcggccagcctgctggaggtcgacagcgag
ggccacggcgggctgcgcctgaccgatgccagccgccaggtgctcaagagcgagcgccag
gtgatgatgcggcgcgagaacccggctgccgggcgcgagcgcagcgcgcagcggaccggc
ctgccggtgcagccgcaggatctggtgctgttcaatgccttgcgcggcctgcgcgcggag
ctggccaaggagcagaacgtgccggccttcgtgatcttccacgacagcacgctgcgcaat
atcgccgaacagcggccgaccagcatcgacgcactgtcgcgcgtcggcggtatcggcggc
ggcaaactggcccgctatggcgcgcaactgatcgagatcgtgcgcgagcagggctga
DBGET
integrated database retrieval system
