Xanthomonas sp. CPBF 426: XSP_000949
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Entry
XSP_000949 CDS
T10769
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XSP_000949 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xaz03021
]
XSP_000949 (rpoB)
03400 DNA repair and recombination proteins [BR:
xaz03400
]
XSP_000949 (rpoB)
Enzymes [BR:
xaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XSP_000949 (rpoB)
Transcription machinery [BR:
xaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XSP_000949 (rpoB)
DNA repair and recombination proteins [BR:
xaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XSP_000949 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
CAD1788474
LinkDB
All DBs
Position
1:1118107..1122258
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPTKRKDLGLHAALKS
VFPISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLLT
RILSHDVVDGSTGELLANANDEITEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKDV
LGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGPNLK
KGDNVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSELRKFLDDIYNHDSAINAQR
VDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQLYDGRTG
EAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaaaaagcgtatccgcaaggacttcggcaagcagcgc
tcgattctcgaagtgccgttcctgcttgcgatccaggtggattcctaccgcgaattcctg
caggaagacgtggagccgaccaagcgtaaggacctcggtctgcacgcggcactgaagtcg
gtgttcccgatttccagctacagcggcaacgccgcgctggaatacgtcggctacaagttg
ggtcagccggtgtttgacgagcgtgaatgccgtcagcgcggcatgagctatggcgcgccg
ctgcgcgtgaccgtgcgtctggtgatctacgaccgcgagtcgtcgaccaaggccatcaag
tacgtgaaggagcaggaggtctatcttggcgaaatcccgctgatgaccgacaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgctcgccgggtgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccgtaccgcggttcctggctggacttcgagttcgacccgaaggatgcgctgttc
acccgtatcgaccgtcgccgcaagctgccggtgtcgatcctgctgcgtgcgctcggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggac
gaaggcgtgcagctggagctggtgccggagcgtctgcgtggtgaaacgctgaacttcgac
ctggccgatggcgacaaggtcatcgtggaagcgggcaagcgcatcaccgcccgtcacgtc
aagcagctcgaagccgccggcgttgccgcgctggccgtgccggacgactatctgctcacc
cgcatcctgtcgcacgacgtggtcgatggctcgaccggcgaactgctggccaatgccaac
gacgagatcaccgaagaccagctggcggccttccgcaaggccggcgtcgatgcggtcggc
accctgtgggtgaacgatctggaccgcggtccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacccagctcgaagcgctggtcgaaatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggaagccgctcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgtcgcgtcggccgcaaggatgtg
ctgggcgagtcggtgctgtacgacaagaagtactttgccgagcgcaacgacgaagaatcc
aagcgcctggtcgccgagcacaccgacacctccgacatcctggaagtgatcaaggtgctc
accgagatccgtaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggaacgcctgtcgatggccgagtccgagggtctgaccccgcaggaactg
atcaacgccaagccggtggctgcggcgatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctccgca
ctgggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcatccg
acccattacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggcctgatc
aactcgctggccgtgtttgcccgcaccaaccagtacggcttcctcgagacgccgtaccgc
aaggtgctggacggcaaggtctccgacgacgtcgaatacctgtcggcgatcgaagagaac
gagtacgtgatcgcccaggcgaacgcgctgaccgatgccaagaacatgctcaccgagcag
ttcgtgccgtgccggttccagggcgagtcgctgctgaagccgccggccgaagtgcacttc
atggacgtctcgccgatgcagaccgtgtcggtcgccgcggcgctggtgccgttcctggag
cacgacgacgccaaccgtgcactgatgggcgccaacatgcagcgccaggccgtgccgacg
ctgcgttcgcagaagccgctggttggtaccggcatcgagcgtgcggttgcgcgcgactcg
ggcgtgaccgtcaatgccttgcgtggtggcgtgatcgagcagatcgacgcggcccgcatc
gtggtcaaggtcaacgaggcggaaatcggcggcggcaccgatgccggcgtggatatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
aacgtgggtgatgtgatcgcgcgcggcgacgtgctggccgacggcccgtccaccgacatc
ggtgaactggcgctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgttacaccacgatc
cacatcgaggaactgacctgcgttgcacgcgacaccaagctggggccggaggaaatttcc
gccgacatcccgaacgtgtccgagcaggcgctgaaccgtctggacgagagcggcgtggtg
tacatcggtgcggaagtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gagagccagctgaccccggaagaaaagctgctgcgtgcgatcttcggtgagaaggcgtcc
gacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgtgcgcgtcagatcgaagagtcc
gagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacgcacgtctgcgttcgcagatcgtgggcaaggttgccaacggcggtccgaacctgaag
aagggcgacaacgtcaccgacgcgtatctggacgggctgaagaagtccgattggttccag
ctgcgcatgaaggacgaagacgcagccgacgccatcgagcgcgcacagaagcagatccag
gcgcacgaaaaggaattcgaagcacgctttgccgacaagcgcggcaagatcacccagggc
gatgacctcgcaccgggcgtgctgaagatggtcaaggtgttcctggcagtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaatgtc
gtgccggtcgaggacatgccgtacatggctaccggcgagccggtcgacatcgtgctgaac
ccgctcggcgtgccgtcgcgtatgaacatcggccagattctggaagtgcatctgggctgg
gccgccaagggcctgggtcgcaagatccagcgcatgctggaagcccaggcggcggtcagc
gagctgcgcaagttcctggacgacatctacaaccacgacagcgcgatcaatgcacagcgc
gtggacctgtcgcagttcagcgatgaggaattgctcaacctgggcaagaacctgatcgat
ggcgtgccgatggccaccccggtgttcgacggcgccagcgaagcggaaatcaagcgcatg
ctggaactggccgagctgccgcagagcggtcagacccagctgtacgacggtcgtaccggc
gaagcgttcgatcgcaagaccacggtcggctacatgcactacctgaagttgaaccacctg
gtcgacgacaagatgcatgcgcgctcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggtggtcagcgcttcggtgagatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgatggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgttggtgaaggaaatccgctcgctggcgatcaacatggaa
ctggaagagtga
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integrated database retrieval system
