Xanthomonas bundabergensis: AB3X10_08010
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Entry
AB3X10_08010 CDS
T10887
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
xbn Xanthomonas bundabergensis
Pathway
xbn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB3X10_08010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xbn03000
]
AB3X10_08010
03400 DNA repair and recombination proteins [BR:
xbn03400
]
AB3X10_08010
Enzymes [BR:
xbn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
AB3X10_08010
Transcription factors [BR:
xbn03000
]
Prokaryotic type
Helix-turn-helix
AraC family
AB3X10_08010
DNA repair and recombination proteins [BR:
xbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AB3X10_08010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
XEA92497
LinkDB
All DBs
Position
complement(1900267..1901742)
Genome browser
AA seq
491 aa
AA seq
DB search
MSQPTPDDHALYDRARQSRDARFDGVFFTAVRSTGIYCRPVCPAPAPKRSNVRYYPSAAA
AAAAGYRPCLRCRPELSPEAQQHLGEESVRRALALIAEGALQDASVEQLAAEVGLSARQL
QRVFVGQLGATPAAVHATRRLLLAKQLLTETALPITQVALAAGFNSLRRFNTAFLEGCGM
PPSAIRKQRAEVPGGDLTLRLGYRPPLDFAAMLAFLRKRAIPGIERIGEASYERVLGPLA
ASTRIQVEADPQRHELRLRIAAADPRAIPDIVRRVRRIFDLDADLRAVHATLGAEPLLAR
AIARRPGLRVPGGWDGFEVAVRAVLGQQVSVAGAATLAARLVERHGGHRPGQPSGLDRAF
PAPPQLLDAPLEAIGLPRSRAATIRALAAAVVDGRLQFRAGQRLSEFVERATALPGIGAW
TAQYIALRALGQPDAFPAGDLVLQRVLGADGARLSERATEARAQAWRPWRAYAVLQLWHL
AGDPPEETSHD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagcccacgcccgacgaccacgccctctacgaccgcgcccgccagtcgcgcgac
gcgcgtttcgacggggtgttcttcaccgccgtgcgcagcaccggcatctactgccggccg
gtgtgcccggcgccggcgcccaagcgcagcaacgtgcgctactaccccagcgccgcggcc
gcggccgcggccggctaccgcccgtgcctgcgctgccggccggaactgtcgccggaagcg
cagcagcacctgggcgaggaatcggtgcggcgcgcgctggcgctgatcgccgagggcgcg
ctgcaggacgccagcgtcgaacagctcgccgccgaggtcgggctcagcgcgcgccagctg
cagcgcgtgttcgtcggccagctcggcgccaccccggcggcggtgcacgcgacgcggcgc
ctgctgttggccaagcaattgctgaccgagaccgcgctgccgatcacccaggtggcgctg
gcggccggcttcaacagtttgcgccgcttcaacaccgcgttcctggaaggctgcggcatg
ccgccatcggcgatccgcaagcagcgtgccgaggtgccgggcggcgacctgacgctgcgc
ctgggctatcgcccgccgctggacttcgcggccatgctggcgttcctgcgcaagcgcgcg
atccccggcatcgagcgcatcggcgaggccagctacgagcgcgtgctcggcccgctcgcg
gcctcgacccggatccaggtcgaggccgatccgcagcgccacgaactgcgcctgcgcatc
gccgcggccgatccgcgcgcgatcccggacatcgtgcgccgggtgcgccgcatcttcgac
ctggacgccgacctgcgcgcggtgcacgccacgctgggcgccgaaccgctgctggcgcgc
gcgatcgcgcgacgcccggggctgcgcgtgcccggcggctgggacggcttcgaggtggcg
gtgcgcgcggtgctcggacagcaggtcagcgtggccggcgcggcgaccctggccgcgcgc
ctggtcgagcgccacggcgggcatcggcccggccagccgtccggcctggaccgtgcgttc
ccggcgccgccgcagttgctggacgcgccgctggaagcgatcggcctgccgcgctcgcgc
gccgccacgatccgcgcgctggccgcggcggtggtggacggacgcctgcagttccgcgcc
ggccagcgcctgtccgagttcgtcgagcgcgccaccgccctgcccggcatcggcgcctgg
accgcgcagtacatcgcgctgcgcgcgctcggccagcccgatgcgttcccggccggcgac
ctggtcctgcaacgcgtgctcggcgccgacggcgcgcgcctgagcgaacgcgccaccgaa
gcccgcgcccaggcctggcggccatggcgcgcctatgccgtgctgcagctgtggcacctg
gccggcgacccacccgaggagacctcccatgactga
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