KEGG   Xanthomonas citri pv. citri mf20: J172_01881
Entry
J172_01881        CDS       T03781                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
xcf  Xanthomonas citri pv. citri mf20
Pathway
xcf02024  Quorum sensing
xcf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J172_01881
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    J172_01881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xcf03019]
    J172_01881
   03036 Chromosome and associated proteins [BR:xcf03036]
    J172_01881
Messenger RNA biogenesis [BR:xcf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     J172_01881
Chromosome and associated proteins [BR:xcf03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    J172_01881
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AJZ08453
UniProt: A0A0U4YKM5
LinkDB
Position
1994336..1994614
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQSNEGNQAEDDDVEQ
NT seq 279 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaggacccatttctcaatgcgctgcggcgcgagcgagtg
cccgtgtcggtgtatctggtcaatggcatcaagctgcagggcacgatcgagtcgttcgac
caattcgtggtcctgctgcgcaataccgtgagtcagatggtgtacaagcacgccatttcc
acggtggtgccggcgcgcaacgtgcgcgtggggcctggtggtgggtatgtgcaatccaat
gaaggcaatcaggcggaagatgacgacgtcgagcagtaa

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