Candidatus Xianfuyuplasma coldseepsis: G4Z02_06200
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Entry
G4Z02_06200 CDS
T08386
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xcl
Candidatus Xianfuyuplasma coldseepsis
Pathway
xcl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G4Z02_06200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcl03021
]
G4Z02_06200 (rpoC)
03400 DNA repair and recombination proteins [BR:
xcl03400
]
G4Z02_06200 (rpoC)
Enzymes [BR:
xcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G4Z02_06200 (rpoC)
Transcription machinery [BR:
xcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G4Z02_06200 (rpoC)
DNA repair and recombination proteins [BR:
xcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G4Z02_06200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QMS85359
UniProt:
A0A7L7KSG7
LinkDB
All DBs
Position
1296842..1300555
Genome browser
AA seq
1237 aa
AA seq
DB search
MSQRFSHYKIRLASPEEIRGWSFGEVKKHETINYRTLKPEKDGLFCEVIFGPTKDYQCAC
SNKSKRSSHTGKKCPVCGVEITESKVRRERMGHIELAAPVVHTWYLRNSPSRLATLLDLK
AKDLEEVVYLASYIVTDPGDTDLQYKQILSEAEYSVKYMEYGSRFKAQSGAEAVKTLLKR
LDLKRESMILRKNLPNSSKQKRQKIIKRLSVVEAILQSDNKPEWMVLDVLPVIPPELRPM
VQLDGGRFATTDLNDLYRRILNRNNRLKRQFEQNAPHLITKNEKRMLQEAVDALIDNSKR
GRKVVEKNRPLKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPDLEMYQCGLPKEMA
VTLFKPFVIKELIEREIASNIKSAKRLVDTLKDDRIWDVLEDVISEHPVLLNRAPTLHRL
GIQAFEPKLVEGKAIRLHPLVTTAFNADFDGDQMAVHVPLSEEAQAEARVLMLASNNILN
PKDGKPIVTPSQDMVLGNYYLTLEKAGEIGEGRVFGRVDEVTLAFENKQITLHTRIAMRG
SALGNAPLTEEQRNGYLVTTYGKLYFNSILPEEFAYLNEPTLTNLQKQVDPETGEERYIT
PDKYFVPKGVSVKEYIQNQPLVPPFKKGFLSNIIAEVFNVYKINETSKMLDKLKNLGFKF
STQAGITVSASDVKVYSKKHDEVEKTQAIVNQLYMQYEMGLLTDYERYKLVIKEWADVKA
RIQKGLMDELTSDNHIYMMSDSGARGNASNFTQLAGIRGSMANTKREGLNTAYNIKAGIK
STIELPVKSSFIEGLTMSEFFISTHGARKGSTDTALKTADSGYLTRRLVDVSQDLVITED
DCGTDNGTTIREIVHSDGKEIVPFLDRLIGRYTAQSAIHPETGEVIIAKDGYITDDIARR
IVDAGITELKIRSVLTCDSEQGICKKCYGQNLSTGEKVEVGESIGTIAAQSIGEPGTQLT
MRTFHTGGVAGADITQGLPRIQELFEARTPKGKAVISEIDGTISDIEIVEERYKVTVENG
MEKHVYETNSGVTLLVEEGQDVRAGTKITDGSIDPKQYLKATDAETVQQYLLSEVQKVYR
AQSIEISDKHIEVIIHQMMRRINVVLEGDTMLLPGAQVSIREFKEANAEALKARKRPAIG
RPALLGITRASLRSESFLSAASFQETTRVLTDASIRGKVDDLVGLKENVIIGGLIPAGTG
ILRDTKFEYERPTPEDEEEIFEQEQLDENPFLDDYQF
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaacgtttttcacattataaaatccgcctagcatctccagaagagatccgcggt
tggtcctttggtgaagtgaagaagcatgaaacaatcaactaccgtacattgaagccagaa
aaagacggtctgttttgtgaagtcatcttcggtcctaccaaagattaccaatgtgcttgt
agcaacaaatcaaaacgcagtagccacaccgggaaaaaatgtcctgtttgtggtgttgaa
ataactgaaagtaaagtccgtcgtgaacggatgggacacatcgaacttgctgctcccgtc
gttcatacatggtacttacgcaatagtccttcgcgtcttgcaacgttattggacttaaaa
gcaaaagatttagaagaagttgtctatcttgccagttacatcgtcaccgatcctggggat
accgacttacaatacaaacaaatcttaagtgaagccgaatattccgtaaaatacatggaa
tacggtagccgcttcaaagcccaatcgggtgctgaagctgtaaaaacattattaaaacgg
ttggatttaaaacgcgaaagtatgatcttacgtaaaaatctacccaattcatcgaaacaa
aaacgtcaaaaaatcatcaaacggttaagcgttgttgaggcgattttacaatccgacaac
aaaccagaatggatggttttagatgtcctacctgttattcctcctgaattacgaccaatg
gttcagttagatggtggtcgctttgcgacaaccgacttaaatgacctgtaccgtcggatt
ttaaaccggaataaccgattaaaacgtcaatttgaacaaaatgcgccacatttaatcacc
aaaaacgagaaacggatgttacaagaagcggttgacgccttaattgataactccaaacgt
ggacgtaaagtggttgagaaaaaccgtcccttaaaatcattaagtgatttattacgtggg
aaacaaggtcgtttccgtcaaaacttactagggaaacgtgtcgattattctggacgttcc
gtaatcgttgttggaccagaccttgaaatgtatcaatgtggattaccaaaagaaatggcg
gtaaccctattcaaaccattcgttattaaagagttaatcgaacgcgaaatcgcgtcgaat
atcaaaagtgcaaaacgcttggtagataccttaaaagatgatcgtatctgggatgtctta
gaagacgtcatcagtgaacatccggttctattaaaccgtgcacctacccttcaccgcctt
gggattcaagcctttgaaccaaaactggttgaaggaaaagccatccgattgcacccactc
gtaaccactgcgtttaacgccgacttcgatggggatcaaatggccgttcatgttccgtta
agtgaagaagctcaagcggaagcacgggtattgatgcttgcatccaacaacatcttgaac
cctaaagatggaaaaccaattgttacaccgtctcaagacatggtactagggaactattac
ctcaccttggaaaaagccggagaaattggtgaaggacgtgtatttggacgtgtggatgag
gtaaccttagcctttgaaaacaaacaaattacattacatacgcgaattgcgatgcgtggt
agcgcccttgggaatgcaccacttactgaagaacaacgcaatgggtatttagtaacaacc
tacggtaagttgtacttcaatagtattttacctgaagagtttgcgtacctaaatgaaccg
acattaacgaacttacaaaaacaagtcgatcctgaaacgggtgaagagcgatacattaca
ccggacaagtactttgtaccaaaaggtgtctcggttaaggagtacatccaaaatcaaccg
cttgtcccaccatttaaaaaaggattcttatccaatatcattgctgaggtattcaatgtc
tacaaaatcaatgagacctcaaaaatgttggataaactgaaaaatcttggctttaaattc
tcgacccaagctggtatcactgtaagtgcatccgatgttaaagtctattcgaaaaaacat
gatgaagtcgagaaaactcaagcaattgtcaatcaattatacatgcaatatgaaatgggt
ctattaacggattacgagcgctataaactcgttattaaagaatgggccgatgtaaaagcc
cggattcaaaaaggattaatggacgaattaacaagcgataaccatatctatatgatgagc
gactctggagctcgtggtaacgcctcaaacttcacccagttagctgggattcggggatcg
atggcaaataccaaacgcgaaggattgaacaccgcatacaatatcaaagcaggaatcaaa
tcaaccatcgagttaccggttaaatcctcgtttatcgaaggattaaccatgagtgagttc
tttatctcgacccatggggcgcggaaaggttctaccgataccgcgttaaaaaccgctgac
tcaggatacctaacccgtcgtttggttgatgtatcgcaagatcttgttattaccgaagac
gattgtggtaccgacaacggtacgacaattcgtgaaattgtacatagtgatggaaaagaa
attgttccattcttagaccgtttgatcggtcgttatactgctcaatctgcaatccatcca
gaaacaggcgaagtgattatcgccaaagatgggtacatcaccgatgacattgcacgacgg
attgtcgatgctggcattaccgaactcaaaatccgcagcgtattaacctgtgatagcgag
caaggtatttgtaaaaaatgttacggtcaaaacctatcaacgggtgaaaaagttgaagtt
ggtgaaagcattggtaccatcgccgcccaatcgattggtgaacctggtactcagctgaca
atgcgtaccttccatactggtggggttgcgggtgccgatatcacccaaggtcttcctcgg
attcaagagttatttgaagcccgaacaccaaaaggaaaagccgttatcagcgaaattgat
ggaaccatttcagatattgaaatcgttgaagaacgctataaagtaacagtagaaaacggc
atggaaaaacacgtctatgaaaccaatagtggagttacattactcgtggaagaaggacaa
gatgttcgtgctggaaccaaaattacggatggatcgattgatccaaaacaatatttaaaa
gcaaccgatgcagaaacggtacaacagtacttactcagtgaagtacaaaaagtataccgg
gctcaaagcattgaaatttccgataaacacattgaagtaatcattcaccaaatgatgcgt
cgtatcaatgtcgtccttgaaggagacacaatgttattaccgggagcacaagtatcgatt
cgtgagttcaaagaagcaaatgcagaagcactaaaagcgcgtaaacgtccagctattggt
cgtccagcattactcggtattactcgagcaagcttacgtagtgaatcattcttaagtgca
gcatccttccaggaaacaacacgtgtccttaccgatgcatcgatccgcggtaaagtcgat
gacttagtcggattgaaagaaaatgttatcatcggaggattaatccctgcaggtactggt
atcttacgcgatacgaaattcgagtacgaacgtccaactcctgaggatgaagaagaaatc
ttcgaacaagaacaactcgatgaaaatccattcttagatgattatcaattctaa
DBGET
integrated database retrieval system
