KEGG   Xiphophorus couchianus (Monterrey platyfish): 114133454
Entry
114133454         CDS       T05908                                 
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
  KO
K07466  replication factor A1
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030  DNA replication
xco03420  Nucleotide excision repair
xco03430  Mismatch repair
xco03440  Homologous recombination
xco03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114133454 (rpa1)
   03420 Nucleotide excision repair
    114133454 (rpa1)
   03430 Mismatch repair
    114133454 (rpa1)
   03440 Homologous recombination
    114133454 (rpa1)
   03460 Fanconi anemia pathway
    114133454 (rpa1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xco03000]
    114133454 (rpa1)
   03032 DNA replication proteins [BR:xco03032]
    114133454 (rpa1)
   03400 DNA repair and recombination proteins [BR:xco03400]
    114133454 (rpa1)
Transcription factors [BR:xco03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    114133454 (rpa1)
DNA replication proteins [BR:xco03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    114133454 (rpa1)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     114133454 (rpa1)
   MMR (mismatch excision repair)
     114133454 (rpa1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     114133454 (rpa1)
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon Pox_vIL-18BP CATSPERD-E_C DUF5521
Other DBs
NCBI-GeneID: 114133454
NCBI-ProteinID: XP_027855168
LinkDB
Position
18:complement(27094252..27118672)
AA seq 600 aa
MASLSTGAIEALANGSGWSEAVLQLLNIRKIDGGSGPSRFRVMMSDGRHTLSSFMLSTQL
NYMAEENLLVPNCVCVLKRQVTNVLKDGRRVVIILEIDVIKPADASDKIGDPIPYSDGQS
KGPQPAPVPESRPPLQPQNRNEGVDTNLKRNFAKKIPSALPDTPGGSSKIVPIASLNPYQ
SKWTIRGRVTNKSSVRTWSNARGEGKLFSMEIVDESGEIRVTCFNQEVDKFFSLIEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESTVIPCEDSCDVPMMQCDFVSIGDLENREKD
AIVDVIGVCKSVDELTRLTTKANREVSKRALSLMDMSGKLVTVTLWGEEAEKFDGSGQPI
VAIKAAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHAMEGQSLTEVRGAGR
SLLENWKSLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADHADNQWVTCFQDSAEAILGQNAAYLGQLKDSNES
AFDEIFQQANFNTFIFRNRVKLETYNDESRIKATVMEVKPVDHRDYSKRLIMNIRSMGAK
NT seq 1803 nt   +upstreamnt  +downstreamnt
atggcgagtctttcaacgggcgcgatagaggctttagcaaatggcagcggttggagcgaa
gcagtgcttcagttgctgaacattcgcaagatcgatggcgggagtgggccctctcgcttc
agggtgatgatgagcgacggacgacacacactgtcatccttcatgctctccactcagcta
aactacatggccgaggaaaaccttctggtcccaaactgcgtgtgcgtcctgaagcggcag
gtcacaaatgtgctcaaagatggacgacgagtggtaatcattttagaaattgacgtcatc
aaacctgctgacgcctctgataaaataggagacccaattccttactctgatggccagagc
aaaggcccgcagccagctccagtccctgagagcagaccgcctctacagccacaaaacaga
aatgaaggtgtagacacaaatttgaagagaaactttgcaaagaagattccttctgctttg
cctgatactccaggaggaagctccaaaattgtccccatcgccagcctcaacccctaccag
tccaagtggacaatccggggtcgtgtgaccaacaagagctccgttcgtacgtggagcaac
gctcgaggcgaaggaaaactcttctctatggagatcgtagatgaaagtggggagatccgt
gtgacctgcttcaaccaagaagtcgacaagttcttctctctcatcgaggtcggcaaggtc
tactacgtctccaagggctctctgaagatcgcaaacaagcagtacacgtcggtgaagaac
gactacgaaatgactctcaacggagagtccaccgtcattccctgtgaggacagctgcgac
gttcccatgatgcagtgcgactttgtctccatcggcgacttggagaacagagagaaagac
gctatcgttgatgtaattggagtgtgcaagagcgtggatgagctgacccgcctgacgacc
aaggccaaccgcgaagtgtccaagagggcgctgagtttgatggacatgtccgggaagttg
gtgaccgtcaccctgtggggagaggaagcggagaagttcgacggctccggacagccgatc
gtagccataaaggccgccaagctctcggacttcggaggccgctcgctttccgcgtccttc
agcagcaccatgatgatcaacccagacatcccagaggcatacaagctcagaggctggttt
gacaaggaaggacacgccatggagggtcagtccctgacggaagtgagaggtgccggcaga
agtctcttggagaactggaagtccttggctgacgtgaagtcggagcatctgggacacggt
gacaaggctgactactactcctgcatagccaccatcgtgtttctgcgtaaggagaactgc
ctttatcaggcctgcccaagccaggactgcaacaaaaaagtggtggaccagcagaatggc
atgttccgctgcgagaagtgcgataaagagtttcccaacttcaagtaccgcctcattctg
tccgccaacattgcggaccacgccgacaaccagtgggtgacttgcttccaggacagcgct
gaggccatcctgggccagaacgctgcttacttgggccagctgaaggactcgaacgaatca
gcgttcgacgagatcttccagcaagcgaacttcaatacttttatctttcgcaacagagtg
aagctggaaacgtataacgacgagtcgaggattaaagcgacagtgatggaggtgaagcct
gtcgaccacagagactacagcaagaggttgatcatgaacatacggagtatgggagccaag
tag

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114153522
Entry
114153522         CDS       T05908                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
  KO
K07466  replication factor A1
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030  DNA replication
xco03420  Nucleotide excision repair
xco03430  Mismatch repair
xco03440  Homologous recombination
xco03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114153522
   03420 Nucleotide excision repair
    114153522
   03430 Mismatch repair
    114153522
   03440 Homologous recombination
    114153522
   03460 Fanconi anemia pathway
    114153522
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xco03000]
    114153522
   03032 DNA replication proteins [BR:xco03032]
    114153522
   03400 DNA repair and recombination proteins [BR:xco03400]
    114153522
Transcription factors [BR:xco03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    114153522
DNA replication proteins [BR:xco03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    114153522
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     114153522
   MMR (mismatch excision repair)
     114153522
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     114153522
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon CATSPERD-E_C
Other DBs
NCBI-GeneID: 114153522
NCBI-ProteinID: XP_027887924
LinkDB
Position
11:29677672..29721351
AA seq 700 aa
MTAKLTHGAVEALVKGSHVENPVLQLLNIRQINTSGVPRYRLMMSDGQHYLSSFLMATQL
NHLAEEKLLVPHCVCLLKRTTNNTLSDGRRVVVIVDMVVLKSAEEAGEKIGNPKSYSTDG
QLSSPNKVSSTTSEPSSTSAAEVPGPSNNSKGWGARFTGKAPVKTSPMKTFPLKGSPMKT
SPIKASPMMTSPMKGSPMKGSSMMTSPMKGSQMKSSPMMTSPMKGSPMKGSSMMTSPMKG
SPMKGSPMMTSPMKGSPMKASTSSPGSVPKVMPIATLNPYISKWTIRARVTNKSNIRNWS
NSRGEGKLFSFEVVDESGEIRITAFNNEVDKFFTLLEQGKVYYISKATLKVANKQYTTLK
NDYEMTLHAHSSIVPCTDSPEVPVMQCDFVPIGELENRDKDSIVDLIGVCNSAEDVSRIT
TKTSREVSKRAISLIDTTGKVVTVTLWGEEAEKFDDSGQPVVAIKGARLSDFRGISLSAL
FSSTIMVNPDLPEAFRLRAWYDREGYAVDSQSLTETMSVSVGSKMNWRTLSDVKNENMGH
GEKADYFSCVATIVYMRKENCLYQACPSSDCNKKVIDQQNGFYRCEKCNREFPNFKYRLL
LSANLADFGDNQWVTCFQETAEVLLGRKAEELGQLRETDEAEFDEVFQKANFSTHIFKNR
VKLETYNDESRVKVTVMEVLPVDHRVYSRRLLSNIQKLAH
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgactgcgaaattaacacatggggcagttgaagcccttgtgaaaggatcgcatgtagag
aatccggttctgcagttactgaacattcgtcagattaatacctcaggtgtgcccaggtac
cgcctcatgatgagtgatggtcagcactacttgtcttccttcttgatggccacccagttg
aaccatctggcagaagagaaacttcttgtaccacattgtgtgtgtttgttaaaaaggaca
accaataacactttgtcagatggccggcgcgtggtcgttattgtggacatggtggtcttg
aagtcagcagaagaagctggagaaaagattggaaatcccaaatcatattcaacagatggt
cagttgtcatctccaaataaggtgtcatcaaccacctcggaaccatcatccacttcagcc
gctgaggtacctggaccgtccaacaacagcaaaggatggggagcacgttttactggaaaa
gctcctgtgaagacttcaccaatgaagacctttcctttgaaagggtcgcccatgaagacg
tcacccataaaagcctcacctatgatgacctctcccatgaaagggtcacccatgaagggt
tcatcaatgatgacctctcccatgaaagggtcacagatgaagagttcaccaatgatgacc
tctcccatgaaagggtcacccatgaagggttcatcaatgatgacctctcccatgaaaggg
tcacccatgaagggttcaccaatgatgacctctcccatgaaagggtcacccatgaaggcg
tccaccagttcaccaggttctgtcccaaaggtgatgcctatcgctaccctcaacccgtac
atcagcaagtggactattagagccagagtcacaaacaaatccaatatccgtaactggagt
aactccagaggggagggcaagctcttctcctttgaggtcgtggatgagagcggtgaaatc
aggatcacagccttcaacaatgaagtggacaagtttttcactctattggagcaaggcaag
gtgtactacatctcgaaggctactctaaaggtagccaacaaacagtatacgacactgaag
aacgactacgagatgaccctccatgctcattcatctattgtaccttgtacggacagtccg
gaagtcccagtaatgcagtgtgactttgtgcccattggagagctggaaaaccgagacaaa
gactccattgttgatttaattggagtgtgcaacagtgcagaggatgtatcccgtatcacc
actaagaccagccgggaagtctccaagagggccatcagcctaatagacaccactggcaaa
gtggtgacagtcacactgtggggagaagaggcggaaaagtttgacgactccggacagcct
gttgttgccatcaaaggagctcgcttgtctgattttcggggcatatctctctcggctttg
ttcagttctacgattatggtcaacccagatttacccgaagccttcagactcagggcctgg
tatgaccgggaaggttatgcagttgacagccagtcactaacagaaaccatgtcagtcagt
gttggatcgaagatgaactggagaacgctgagtgatgttaagaatgaaaacatgggacac
ggagaaaaggcagactattttagctgcgtggcaactatagtatacatgcgtaaagaaaat
tgtttgtatcaagcctgtccgtcttcagactgcaacaagaaggtcatagatcaacagaat
ggtttttaccgctgcgagaagtgtaacagagagttccccaacttcaaatatagactccta
ctttcagctaacttggcagactttggggataaccagtgggtgacatgcttccaggagaca
gctgaggtcctgctgggtcgcaaggcagaagagctgggacagctcagagaaacagacgag
gcagagtttgatgaagtcttccagaaagccaacttctctacccacatctttaaaaaccga
gtcaagctggagacatataatgacgagagtcgggtgaaagtgaccgtaatggaagtactt
cctgtcgaccacagagtgtacagccgaagactcctcagcaacattcaaaaattggctcac
tga

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