Xiphophorus couchianus (Monterrey platyfish): 114133633 Help Entry 114133633         CDS       T05908                                  Symbol polr2i Name (RefSeq) DNA-directed RNA polymerase II subunit RPB9 isoform X1   KO K03017   DNA-directed RNA polymerase II subunit RPB9 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114133633 (polr2i)   09124 Replication and repair    03420 Nucleotide excision repair     114133633 (polr2i)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114133633 (polr2i)    03400 DNA repair and recombination proteins [BR:xco03400]     114133633 (polr2i) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Pol II specific subunits      114133633 (polr2i) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114133633 (polr2i) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_recom DZR HVO_2753_ZBP Zn_ribbon_Top1 Zn_Ribbon_1 HVO_0758 Motif Other DBs NCBI-GeneID:  114133633 NCBI-ProteinID:  XP_027855483 LinkDB All DBs Position 18:14283913..14286368 Genome browser AA seq 134 aa AA seqDB search MDLEGGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKIT HEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEVRIPLKGSLYDLSV VVPHWMLLTYFELI NT seq 405 nt NT seq  +upstreamnt  +downstreamnt atggatttagaaggtggaacatacgagccgggatttgttggaatacggttttgtcaagaa tgtaataacatgttgtaccctaaggaagacaaagagaaccgcatcttgctgtatgcgtgt agaaactgtgactatcagcaggaggctgacaacagctgcatctatgtcaacaagatcacc cacgaggttgatgaactgacacaaatcatcgctgatgtagcccaggatccaacgctgccg agaacagaggatcacccctgtccaaaatgcggtcacaaggaggcagtgttcttccaatct cacagtatgaaggctgaggtaagaattccccttaaaggaagtctttatgacctttctgta gttgttcctcattggatgttattgacatattttgaacttatttga

Xiphophorus couchianus (Monterrey platyfish): 114135293 Help Entry 114135293         CDS       T05908                                  Symbol polr2j Name (RefSeq) DNA-directed RNA polymerase II subunit RPB11-a   KO K03008   DNA-directed RNA polymerase II subunit RPB11 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114135293 (polr2j)   09124 Replication and repair    03420 Nucleotide excision repair     114135293 (polr2j)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114135293 (polr2j)    03400 DNA repair and recombination proteins [BR:xco03400]     114135293 (polr2j) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      114135293 (polr2j) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114135293 (polr2j) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_L_2 RNA_pol_L SHNi-TPR Motif Other DBs NCBI-GeneID:  114135293 NCBI-ProteinID:  XP_027858237 LinkDB All DBs Position 20:complement(3713666..3715067) Genome browser AA seq 117 aa AA seqDB search MNAPPAFESFLLFEGEKKISISKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAG YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE NT seq 354 nt NT seq  +upstreamnt  +downstreamnt atgaacgctcctccagctttcgagtcatttctgctgtttgagggagagaagaagatcagc atcagcaaagacacgaaggttcccaacgcctgtttgttcaccctgaacaaggaggaccac acgctgggcaacatcatccgagctcagctgctgaaggacccccaggttctcttcgccggt tataaagttcctcaccccttggagcataagattgtcatccgggtccagaccacacctgac tacagtccccaggaagcattcaccaatgccatcacagacttgatcagtgagctgtcgctg ctggaggaacgcttccgggtcgccattaaagacaaacaggaaggaattgagtga

Xiphophorus couchianus (Monterrey platyfish): 114139050 Help Entry 114139050         CDS       T05908                                  Symbol polr2g Name (RefSeq) DNA-directed RNA polymerase II subunit RPB7   KO K03015   DNA-directed RNA polymerase II subunit RPB7 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114139050 (polr2g)   09124 Replication and repair    03420 Nucleotide excision repair     114139050 (polr2g)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114139050 (polr2g)    03019 Messenger RNA biogenesis [BR:xco03019]     114139050 (polr2g)    03400 DNA repair and recombination proteins [BR:xco03400]     114139050 (polr2g) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Pol II specific subunits      114139050 (polr2g) Messenger RNA biogenesis [BR:xco03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      114139050 (polr2g) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114139050 (polr2g) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  S1 SHS2_Rpb7-N Motif Other DBs NCBI-GeneID:  114139050 NCBI-ProteinID:  XP_027864471 LinkDB All DBs Position 23:complement(14935101..14938744) Genome browser AA seq 172 aa AA seqDB search MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ PSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS NT seq 519 nt NT seq  +upstreamnt  +downstreamnt atgttttaccatatttctttggaacatgaaatcttactacacccgaggtattttggaccc aacctgctgaacactgtgaagcagaaactttttactgaagtggagggaacatgtactggc aagtatggctttgtcattgcagtcaccactattgacaacatcggggctggtgtaatccag ccaagcagaggcttcgttctgtatcccgtgaagtacaaggccattgtcttccgtccattc aagggagaagtggtggatgctgtggtcactcaggttaacaaggttgggctattcacagaa attggtcccatgtcttgcttcatctctcgccattccattccttcggaaatggagtttgac cccaattctaatcctccttgctataagactgttgatgaggacattgtaattcagcaagat gatgagatccggctgaaaattgtgggcacaagggttgacaagaatgacattttcgcaatt ggatctctcatggatgactatctgggtcttgtgagctga

Xiphophorus couchianus (Monterrey platyfish): 114139459 Help Entry 114139459         CDS       T05908                                  Symbol polr2b Name (RefSeq) DNA-directed RNA polymerase II subunit RPB2   KO K03010   DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114139459 (polr2b)   09124 Replication and repair    03420 Nucleotide excision repair     114139459 (polr2b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114139459 (polr2b)    03400 DNA repair and recombination proteins [BR:xco03400]     114139459 (polr2b) Enzymes [BR:xco01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      114139459 (polr2b) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      114139459 (polr2b) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114139459 (polr2b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 DUF5817 Motif Other DBs NCBI-GeneID:  114139459 NCBI-ProteinID:  XP_027865228 LinkDB All DBs Position 23:complement(372932..379980) Genome browser AA seq 1174 aa AA seqDB search MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENEDELDSTNRRYTKRDCSTFLRTSE TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgtacgaccaggacgaagataatcaatatgatgaagatgatgatgaaatcactcctgat ctgtggcaggaagcctgttggatcgtcatcagctcttattttgatgagaagggcctggtg cggcagcagctggactcgttcgatgagttcatccagatgtcggtccagcggatcgtggag gatgctccgcccatcgacctgcaggccgaggcgcagcacacctcaggggaggtggaggag ccgccgcgctacctgctgaagttcgagcagatctacctgtccaagccgacccactgggag cgggacggcgctccgtcccccatgatgcccaacgaggcccggctccggaacctgacgtac tcggcgccgctgtacgtcgacatcactaagacgatcatcaaagagggggaggagcagctg cagacgcagcatcagaagacattcatcggtaaaattcccataatgctccgctccacctac tgcctgctgagcggcctgaccgaccgcgacctgtgcgagctcaacgagtgtccgctggac ccgggcggctacttcatcatcaacggctccgagaaggtgctgatcgcgcaggagaaaatg gccaccaacacggtctacgtcttcgccaagaaggactccaagtacgcgtacacgggcgag tgccggtcctgcctggagaactcgtcccggcccaccagcaccatctgggtcagcatgatg gcccgaggaggacagggggtgaagaagagcgccatcgggcagcgcatcgtgtccacgctg ccgtacatcagacaggaagtgcccatcatcatcgtgttccgggcgctgggcttcgtgtcc gacagagacatcctggagcacatcatctacgacttcgacgacccggagatgatggagatg gtgaagccgtcgctggacgaggcatttgtgatccaggagcagaatgtggcgctgaacttc atcgggtccagaggcgccaagcccggcgtgacaaaggagcggcgcatcaagtacgccaag gaagttctgcagaaggagatgctgccgcacgtcggcgtcagcgacttctgcgagaccaag aaggcctacttcctggggtacatggtccaccggctgctcctcgcggctctgggccggcgg gagctggacgacagggatcactatggcaacaagaggctggacctggccggaccgctgctg gccttcctgttcagagggatgttcaagaacctcctgaaggagatccggatctacgcccag aagttcatcgaccgagggaaggacttcaacctggaactggccatcaagacgcggatcatc tccgacggactcaagtactccctggccaccggcaactggggcgacgtcaagaaggcccac caggcccgcgccggcgtgtcccaggtgttgaaccggctcaccttcgcctccacgctgtcc cacctgcgccgggtcaactcccccatcggccgcgatggcaagctggccaaaccgaggcag ctgcacaacacgctgtggggcatggtgtgccccgccgagacgcccgagggccacgccgtg ggtctggtgaagaacctggccctcatggcctacatctcggtcggctctcagccgtctccc atcctggaattcctggaggagtggagcatggagaacctggaggagatttccccggctgcc attgccgacgctacgaagatcttcgtgaacggctgctgggtggggatccacaaagacccg gagcagctgatgaacacgctgaggaagctccgcaggcagatggacatcatcgtgtcagag gtgtcgatgatccgagacatccgggagcgggagatccggatctacacggacgccgggcgg atctgccgaccgctgctgattgtggagaagcagaagctgttgctgaagagacggcacatc gaccagctgaaggagcgagagtacaacaactacagctggcaggacctggtggcaagcggc gtggtggagtacatcgacacactggaggaggaaaccgtcatgctcgccatgacccctgat gacctccaggagaagggcgtggcctactgctccacctacacccactgtgagatccaccct tccatgatcctgggagtctgcgcctccatcatcccgttccccgaccacaaccagtctccc aggaacacgtaccagtccgccatggggaagcaggccatgggcgtctacatcaccaacttc cacgtgaggatggacacgctggcccacgtgctgtactacccccagaagccgctggtcacc acgcgctccatggagtacctgcgcttccgggagctgccagcaggaatcaactccatcgtc gccatcgcctcctacacgggctacaaccaggaggactcggtcatcatgaaccgctcggct gtggatcgcggcttcttcaggtccgttttctaccggtcctacaaggagcaggagtccaag aagggcttcgaccaggaggaaatcttcgagaagccgacccgcgagacgtgtcagggaatg aggcacgccatctacgacaagctggacgacgacgggctgatcgcacccggcgtccgcgtg tccggggaggacgtgatcatcgggaagacggtgacgctgccggagaacgaggacgagctg gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctgcggaccagcgag accggcatcgtggaccaggtcatggtgacgctcaaccaggagggatacaagttctgcaag atccgggtccgttcagtccggatccctcagatcggagacaagttcgccagccgccacggg cagaagggaacctgcgggatccagtaccgacaggaggacatgccattcacctgtgaaggc atcacacctgacatcatcatcaaccctcacgccatcccgtccagaatgactgtcggccat cttatcgagtgtctgcaggggaaggtgtcggccaacaaaggtgagatcggcgacgccacg ccgttcaatgacgccgtcaacgttcagaaagtgtccaacctgctgtccgagtacgggtac cacctgagaggaaacgaggttctgtacaacggcttcacgggaaggaagctgacgtcccag atcttcatcgggccaacctactaccagcggctgaagcacatggtggacgataagatccac tcccgggcccgcgggccggtccagatcctgaaccgccagccgatggagggccgctcccgt gacggcgggcttcgtttcggggagatggagcgggactgccagatcgcccacggcgccgcc cagttcctccgggagcgtctgttcgaggcgtccgacccgtaccaggtccacgtctgcaac ctgtgcggcctgatggccatcgccaacaccaggacacacacctacgagtgtcggggctgc cgcaacaagacgcagatctctctggtccggatgccgtacgcctgcaagctgctgttccag gaactgatgtccatgagcatcgctcctcgaatgatgacctcatag

Xiphophorus couchianus (Monterrey platyfish): 114143084 Help Entry 114143084         CDS       T05908                                  Symbol polr2m Name (RefSeq) protein GRINL1A   KO K21987   DNA-directed RNA polymerase II subunit GRINL1A Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114143084 (polr2m)   09124 Replication and repair    03420 Nucleotide excision repair     114143084 (polr2m)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114143084 (polr2m) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Pol II specific subunits      114143084 (polr2m) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  GCOM2 Motif Other DBs NCBI-GeneID:  114143084 NCBI-ProteinID:  XP_027870633 LinkDB All DBs Position 4:16501626..16505912 Genome browser AA seq 329 aa AA seqDB search MSSPWTERQGQVGDLRGHSLEELQELLLRQEKILSNKRFLQTLSDKGKKIRDFAEKVRLA IEQCSEEERSQSLMSAARAELQSKYHQAFSYQHRAAPLTSAASPLNEENEGAAGDGIQDT SLDKHQDQRVSTAETAAVNTKESELVVALDRVTLSEARADEFNEQLNSKAKDNYFLVKQP AKKPHYMTVLEKTERSAAPKRQKFKPNQLPHRNDGSPSGSLSPGRSSATVSLLSALDRKE RDRKHLDDITAARLPPLHHSPAQLLSLEESAVLVREQTKKQQELQAKLAAQKLSEGLKIS MGSYTPDGGPLAAYREVHDEGSHLSSEED NT seq 990 nt NT seq  +upstreamnt  +downstreamnt atgtcctcaccgtggacagagcggcagggacaggttggagacctgaggggccacagctta gaggagctccaggagctgctgctccggcaagaaaagatcctatctaataagcggttcttg cagactctttctgacaaagggaagaaaatccgagactttgcagagaaagtgcgtcttgcc attgaacagtgcagtgaggaggagaggagccagagcttgatgtctgcagccagagcagag ttacagtccaagtatcaccaagctttctcttaccagcaccgtgctgcacccttgacatca gcagcttcacccctgaatgaagagaatgagggtgctgcaggcgatggtatacaggacaca tctttggacaagcatcaggaccagcgtgtctccacagcagagacagctgcagtgaacacc aaagaaagtgaacttgtggttgccttggacagagttactctgtctgaagcgagagctgat gaatttaatgaacaattaaacagcaaggcaaaagataactactttcttgttaagcagcca gctaaaaagcctcactatatgactgtcctagaaaaaaccgagaggtctgcagctcccaag aggcaaaaattcaaaccaaatcaacttccccacagaaatgacggctctccatcagggtct ttgtctcctgggcgttcctctgcaactgtgtcgctgctctccgctctggacaggaaggag cgcgacaggaaacacctggatgacatcactgcagccagactccctcctcttcatcacagt ccagcacagcttctatctttagaagagtcggccgttctcgtcagagaacagacaaagaaa cagcaggagctgcaggccaaactggccgcccagaaactgtctgaaggactgaagatctct atggggagctacactcctgacggtggccccctggccgcctacagagaggttcacgatgaa ggatcccacctctcatctgaggaggactga

Xiphophorus couchianus (Monterrey platyfish): 114143156 Help Entry 114143156         CDS       T05908                                  Symbol polr2l Name (RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC5   KO K03007   DNA-directed RNA polymerases I, II, and III subunit RPABC5 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair xco04623   Cytosolic DNA-sensing pathway Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114143156 (polr2l)   09124 Replication and repair    03420 Nucleotide excision repair     114143156 (polr2l)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114143156 (polr2l)    03400 DNA repair and recombination proteins [BR:xco03400]     114143156 (polr2l) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Pol I, II, III common subunits      114143156 (polr2l)   RNA polymerase III system    RNA polymerase III      114143156 (polr2l)   RNA polymerase I system    RNA polymerase I      114143156 (polr2l) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114143156 (polr2l) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_N Motif Other DBs NCBI-GeneID:  114143156 NCBI-ProteinID:  XP_027870753 LinkDB All DBs Position 4:19317176..19318287 Genome browser AA seq 67 aa AA seqDB search MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL NYAPLEK NT seq 204 nt NT seq  +upstreamnt  +downstreamnt atgattatcccggtcagatgcttcacttgtgggaagattgtgggtaacaaatgggaagct taccttggcttacttcaagcagaatacactgagggtgatgcacttgatgccttgggcttg aagcggtactgctgtcgaaggatgctgctgtctcatgtggatcttattgagaaattgctg aattatgcaccgcttgaaaaataa

Xiphophorus couchianus (Monterrey platyfish): 114150818 Help Entry 114150818         CDS       T05908                                  Symbol polr2e Name (RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1   KO K03013   DNA-directed RNA polymerases I, II, and III subunit RPABC1 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair xco04623   Cytosolic DNA-sensing pathway Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114150818 (polr2e)   09124 Replication and repair    03420 Nucleotide excision repair     114150818 (polr2e)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114150818 (polr2e)    03400 DNA repair and recombination proteins [BR:xco03400]     114150818 (polr2e) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Pol I, II, III common subunits      114150818 (polr2e)   RNA polymerase III system    RNA polymerase III      114150818 (polr2e)   RNA polymerase I system    RNA polymerase I      114150818 (polr2e) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114150818 (polr2e) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb5_N RNA_pol_Rpb5_C NA-iREase1 NYD-SP12_N Motif Other DBs NCBI-GeneID:  114150818 NCBI-ProteinID:  XP_027883331 LinkDB All DBs Position 9:complement(18302817..18305820) Genome browser AA seq 210 aa AA seqDB search MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTV LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA RYFGLKRGQVVKIIRPSETAGRYITYRLVQ NT seq 633 nt NT seq  +upstreamnt  +downstreamnt atggatgacgaggaggaaacttacaggctgtggaaaatccgcaaaaccatcatgcagctc tgccacgacagaggctatttggtgacgcaagacgagttggatcagactctggaggagttc aagagtcagttcggagacaaacccagcgaaggtcgacccagacgtacagaccttacagtg ctggtggcacataatgatgatcccacagaccagatgtttgttttctttcctgaggaaccc aaagtggggataaagaccatcaagatgtactgccagcggatgcaggaggagaacatcact agagccatcattgtggttcagatgggcatgacgccctcggccaagcagtctctagtggac atggcacccaagtacatactggagcagtttctacagcaggaactgcttattaacatcaca gagcatgagcttgttcctgagcacatcgtcatgacaaaagaggaagtgactgaacttcta gccagatacaagttaaaggaaagccagttaccaaggatacaggccggagaccccgtggct cgctactttggattgaagagaggacaggttgtgaaaatcatccgacccagtgaaactgct ggcaggtacatcacctacaggctggtccagtga

Xiphophorus couchianus (Monterrey platyfish): 114151114 Help Entry 114151114         CDS       T05908                                  Symbol polr2c Name (RefSeq) DNA-directed RNA polymerase II subunit RPB3   KO K03011   DNA-directed RNA polymerase II subunit RPB3 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114151114 (polr2c)   09124 Replication and repair    03420 Nucleotide excision repair     114151114 (polr2c)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114151114 (polr2c)    03400 DNA repair and recombination proteins [BR:xco03400]     114151114 (polr2c) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      114151114 (polr2c) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114151114 (polr2c) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_A_bac RNA_pol_L Motif Other DBs NCBI-GeneID:  114151114 NCBI-ProteinID:  XP_027883880 LinkDB All DBs Position 2:23824871..23829147 Genome browser AA seq 275 aa AA seqDB search MPYANQPTVKITELTDENVKFVIENTDLAVANSLRRVFMSEVPTIAIDWIQIDANSSVLH DEFIAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL LSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA GVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEVQAPYDPNGKPERFYFNVESCGSLR PETIVMSALAVLKKKLSDLQTQLSHEIQSDVLTIN NT seq 828 nt NT seq  +upstreamnt  +downstreamnt atgccgtatgctaaccagccgacggtaaaaataacagaattgacagacgaaaatgtcaaa ttcgtcatcgaaaacacggatttggcggttgcaaactctctccgtcgtgtcttcatgtca gaggttcccacaatagccatcgactggatccaaatcgatgctaattcatcagtgctgcac gacgagttcatcgcgcacagagtcggtctcattcccctcaccagcgacgacatagtggat aaaatgcagtattcaagggactgcacctgtgatgacttctgtcccgaatgctccgtggaa ctgaccttggacgtccgctgcaccgaggaccaaacgcgtcacgtcacctctcgcgatctg ctctccaacaaccccagagtgatccctgtcacttccagaagcagagacaatgacccgaac gactacgtcgagcaggatgacatcttgctggtgaaactccgtaaaggtcaggagcttcgg ctgagagcgtacgccaagaagggcttcggtaaagagcacgccaagtggaacccgacggcg ggggtttcattcgagtatgacccggacaacgcactgaggcacacagtctatccacgaccc gaggaatggccaaagagtgaatactcagagattgaggaagatgaagttcaggcgccctat gaccctaacggaaagccagaaagattttatttcaacgtggagtcctgcggttcgctccgg ccggagaccatcgtcatgtcggcgttggcggttctgaagaagaagctcagcgacctgcag acccagctgagccatgagatccagagtgacgtcctcaccattaactga

Xiphophorus couchianus (Monterrey platyfish): 114151213 Help Entry 114151213         CDS       T05908                                  Symbol polr2h Name (RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC3   KO K03016   DNA-directed RNA polymerases I, II, and III subunit RPABC3 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair xco04623   Cytosolic DNA-sensing pathway Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114151213 (polr2h)   09124 Replication and repair    03420 Nucleotide excision repair     114151213 (polr2h)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114151213 (polr2h)    03400 DNA repair and recombination proteins [BR:xco03400]     114151213 (polr2h) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Pol I, II, III common subunits      114151213 (polr2h)   RNA polymerase III system    RNA polymerase III      114151213 (polr2h)   RNA polymerase I system    RNA polymerase I      114151213 (polr2h) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114151213 (polr2h) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb8 RNA_pol_RpbG Motif Other DBs NCBI-GeneID:  114151213 NCBI-ProteinID:  XP_027884092 LinkDB All DBs Position 9:8822468..8825032 Genome browser AA seq 150 aa AA seqDB search MAGILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI ASTLYEDGTPDDGEYNPQDDRPSRADQFEYVMYGKVYKIEGDETSTEAATRLSAYVSYGG LLMRLQGDANNLHGFEVDSRVYLLMKKLAF NT seq 453 nt NT seq  +upstreamnt  +downstreamnt atggctggaattctgtttgaagatatctttgatgtaaaagacattgatccagatggcaag aagtttgacagagtgtctcgactacattgtgaaagtgaatctttcaagatggacctcatc ttggatgtgaacattcagatatatcctgttgatcttggtgacaagttcagactggtgatt gccagcacattatatgaggacggaacaccagatgatggagagtacaaccctcaggatgat cgaccgtctcgggcagaccagtttgagtatgtgatgtatggaaaggtgtacaagattgaa ggcgatgaaacatcaactgaagcagcgacacgtctttctgcctatgtgtcttatggaggt ctgcttatgaggctgcagggagacgccaacaaccttcacggctttgaagtggactccagg gtctaccttcttatgaaaaagttggccttctga

Xiphophorus couchianus (Monterrey platyfish): 114155409 Help Entry 114155409         CDS       T05908                                  Symbol polr2k Name (RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC4   KO K03009   DNA-directed RNA polymerases I, II, and III subunit RPABC4 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03020   RNA polymerase xco03420   Nucleotide excision repair xco04623   Cytosolic DNA-sensing pathway Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     114155409 (polr2k)   09124 Replication and repair    03420 Nucleotide excision repair     114155409 (polr2k)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xco03021]     114155409 (polr2k)    03400 DNA repair and recombination proteins [BR:xco03400]     114155409 (polr2k) Transcription machinery [BR:xco03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Pol I, II, III common subunits      114155409 (polr2k)   RNA polymerase III system    RNA polymerase III      114155409 (polr2k)   RNA polymerase I system    RNA polymerase I      114155409 (polr2k) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       114155409 (polr2k) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Zn_ribbon_RPAB4 A2L_zn_ribbon DmmA-like_C MCM_OB DUF5816 Cytochrome_C7 HypA DZR Zn_ribbon_13 Motif Other DBs NCBI-GeneID:  114155409 NCBI-ProteinID:  XP_027891079 LinkDB All DBs Position 13:13474433..13476134 Genome browser AA seq 58 aa AA seqDB search MDAQKDLQPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR NT seq 177 nt NT seq  +upstreamnt  +downstreamnt atggacgcacagaaagatctacagccgcccaaacaacaaccgatgatctacatctgtgga gaatgtcacactgagaatgaaattaaagctcgtgatcccatcagatgcagagagtgtggc tacaggatcatgtacaagaagagaacaaagagattggttgtatttgatgcacggtga

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