Xiphophorus couchianus (Monterrey platyfish): 114134024
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Entry
114134024 CDS
T05908
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1 isoform X1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03022
Basal transcription factors
xco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114134024 (mnat1)
09124 Replication and repair
03420 Nucleotide excision repair
114134024 (mnat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114134024 (mnat1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114134024 (mnat1)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114134024 (mnat1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114134024 (mnat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
zf-C3HC4
TRAF3_RING
zf-UDP
zf-RING_2
zf-P11
Motif
Other DBs
NCBI-GeneID:
114134024
NCBI-ProteinID:
XP_027856024
LinkDB
All DBs
Position
19:18936645..18996517
Genome browser
AA seq
311 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCENCVEMLFVRGSGNCVQCDTPLRKSNFRV
QLFEDATVDKEVEIRKKVTKIYNKREFDFPSLRDYNDYLEQVEDIVYNLTNNIDVENTKG
RMEQYQRENKDIIQRNKAKLTREQEELEELLLLQQQSNEQRRLEVLQEEQRQLQAKRKSK
QALLDELEQSKLPATILLAQHKVRAAQLETQIEQQKQNVKPTSLFSTGIQIGQTVSLQPL
PRIQEVLYQYKPLQVETYGPPAPDLEQLSRFGYLNHVRAAMPQDTAGGYTSALACYRAMQ
DAFSGLFSVNG
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccagggctgtccgagatgtaagaccaccaagtacaggaacccgtcgctgaag
ctgatggtgaacgtctgcggccacacgctatgcgagaactgtgtggagatgctgtttgtg
cgcggctcggggaactgcgtgcaatgcgacacgcctctgaggaagagcaactttcgcgtg
cagctcttcgaagacgcaactgtggacaaggaggtagagatccgcaagaaggtgacgaaa
atctacaacaaaagagagttcgacttccccagcctgagagactataacgactatctagag
caggtggaggacatagtttacaaccttacaaacaacattgatgtggaaaacaccaagggc
aggatggagcagtaccagagggaaaacaaagacatcatccagagaaataaggcgaagctt
acgcgggagcaggaagagctggaggagctgctgcttctgcagcagcagagcaacgagcag
cggaggctggaagtgttgcaggaggagcagaggcagctgcaggccaagaggaagagcaaa
caggcgctgctggatgaactggaacagtccaagcttcctgccaccatcttgcttgctcaa
cacaaggttcgcgccgcccagctggagacgcagatagagcagcagaaacagaatgtgaag
ccgaccagcttgttctctacggggatccagattggtcaaactgtttctctccagcctttg
ccccgaatacaggaggttctgtaccagtacaaacccctccaggtggaaacctatggacct
ccagcacccgacctggagcaactcagcagatttgggtatctgaaccacgtccgggccgcc
atgccgcaggacacggcgggaggatacacctcggctctggcgtgttaccgcgccatgcag
gacgccttcagtggcctgttttctgtcaatggatga
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