Xiphophorus couchianus (Monterrey platyfish): 114134307
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Entry
114134307 CDS
T05908
Symbol
vti1b
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1B
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
114134307 (vti1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114134307 (vti1b)
Membrane trafficking [BR:
xco04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
114134307 (vti1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Sec20
DUF745
Fusion_gly
DUF3958
Motif
Other DBs
NCBI-GeneID:
114134307
NCBI-ProteinID:
XP_027856628
LinkDB
All DBs
Position
19:complement(1953088..1957026)
Genome browser
AA seq
272 aa
AA seq
DB search
MRKSLGVLIIAKAKLSDLRAHVIVVVLFEKPESLNKPSGLRFKVKMSSEEFEKLHEMYRS
LYDELKLIPERALTSHGEARKKLVRTFDERQGEAEEVLQGMEEELRGAPSSYRNAMSAKL
RLYRRDLGKLQRDMKTSAQGFSSSSQTVQGSHPSVFSSQNQQSTHLQSQRALLLQGTEYL
NNASQSIERSQRIAAETDQIGTDIIEELGEQREQLDRTRDRLMNTGENLSRSRKILRAMS
RRLMTNKLLLAVIILMELGILGAVVYLKFFRK
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcggaagagtctcggggttctgattatagccaaagcaaaactgtcagatttacgtgcg
cacgtaattgttgttgtcttgtttgaaaagccggagtctcttaataagcccagcggactt
aggtttaaagtaaaaatgtcgtcagaagagtttgagaagctgcatgagatgtacaggtcg
ctgtatgacgagctgaagctaattccggagagggctttgacaagccacggagaggcgagg
aagaagctggtgaggacatttgatgagagacagggagaggctgaggaagtgttacaagga
atggaagaggagttgcgtggcgctccttcttcatacagaaacgcgatgagtgcaaagctg
cgcctctaccgcagggatctcggcaagctgcagagggacatgaaaacctcggcgcaaggg
ttcagctcctcgtcccagacagtccagggaagccatccaagcgttttctcatctcaaaat
caacaaagtacacacctgcagtcccagagagctcttttactgcagggaacagagtacctg
aacaacgccagccagagcatcgagcgaagccagcgcatcgccgcggagacggatcagatc
ggcacggatattatcgaggagctgggagagcagagggagcagctggaccggaccagagac
agactgatgaatacaggagaaaacctcagccggagtagaaaaatccttcgcgccatgtcg
cgacgcctgatgacgaacaagctgctgttggccgtcatcattctgatggagctgggcatt
ctgggtgccgtggtctacctgaagttcttccgaaaatga
Xiphophorus couchianus (Monterrey platyfish): 114152061
Help
Entry
114152061 CDS
T05908
Symbol
vti1a
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1A isoform X1
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
114152061 (vti1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114152061 (vti1a)
Membrane trafficking [BR:
xco04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
114152061 (vti1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Mer2
Laminin_II
Sec20
CAP59_mtransfer
DUF1664
GTP-bdg_N
Motif
Other DBs
NCBI-GeneID:
114152061
NCBI-ProteinID:
XP_027885549
LinkDB
All DBs
Position
10:complement(3107960..3241261)
Genome browser
AA seq
217 aa
AA seq
DB search
MSSDFETYEQDFGTITAEVTNKIGKIPKLSGEEKTQLVLNVDKQLEEVRELLEQMDLEVR
EIPIQSRAMYNSRLKSYKQEVEKLEKDFKRSRIAYSDEVRNELLGDDAISSESQRAHLLD
NTERLERSSRRLEAGYQIAVETEQVGQEILANLHTDREKIQRARERLRETDANLGKSSRI
LTGMLRRIIQNRILVFVLGGIILLTIILAIYLNLQSH
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagactttgagacctacgagcaggattttgggactatcaccgcagaagtaacg
aacaaaattggcaaaattcctaaactaagtggagaggagaagacacagctggttctaaat
gtcgacaaacagcttgaagaagtcagagagttgcttgagcagatggacctggaggtgcgg
gagatccccatccagagccgcgccatgtacaacagcagactgaagagctacaagcaggag
gtggagaagctcgagaaagacttcaaaaggtcacgtattgcctacagtgatgaggtgcgc
aacgagctcctgggggatgacgccatctcctcggagagccagagagctcatctgttggac
aacacagaaaggctggaaaggtcatctcggagactggaggccggctatcagattgcagtg
gaaactgaacaagtggggcaggagattcttgccaaccttcacactgatcgtgagaagatt
cagagagccagagaaaggttgagagaaacggacgccaacctggggaagagttctcgcatc
ctgaccggcatgctgagaaggatcatccagaatcgcatcctggtcttcgtcctcggaggc
atcatccttctcaccatcatcttggccatctatttaaatctgcaaagtcactga
DBGET
integrated database retrieval system