KEGG   Xiphophorus couchianus (Monterrey platyfish): 114136425
Entry
114136425         CDS       T05908                                 
Symbol
cul1
Name
(RefSeq) cullin-1
  KO
K03347  cullin 1
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04110  Cell cycle
xco04114  Oocyte meiosis
xco04120  Ubiquitin mediated proteolysis
xco04141  Protein processing in endoplasmic reticulum
xco04310  Wnt signaling pathway
xco04340  Hedgehog signaling pathway
xco04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    114136425 (cul1)
   04120 Ubiquitin mediated proteolysis
    114136425 (cul1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    114136425 (cul1)
   04350 TGF-beta signaling pathway
    114136425 (cul1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xco04121]
    114136425 (cul1)
Ubiquitin system [BR:xco04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Cullin
     114136425 (cul1)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 IntS11_C
Other DBs
NCBI-GeneID: 114136425
NCBI-ProteinID: XP_027860200
LinkDB
Position
21:complement(1478875..1496895)
AA seq 776 aa
MSSSRTQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSS
QTRGPVPPAKPSKKSTTPGGAQFVGLELYKRLKEFLKNYLTSLLKDGEDLMDECVLKFYT
QQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRECLFRPLNKQVT
NAVLKLIERERNGETINTRLISGVVQSYVELGLNEEDAFAKGPTLSVYKEYFECQFLTDT
ERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHL
EIFHTEFQNLLDADKNEDLGRMYNLVSRITDGLGELKKLLETHIHNQGLAAIEKCGEAAL
NDPKVYVQTTLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTRMAQSSSKSPE
LLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSA
SDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLSNSEPLDLDFSIQVL
SSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYHLSKGELVTNCFKNRYT
LQASTFQMAILLQYNTEDSYTVQQLTDSTQIKTDILVQVLQILLKSKLLVLEDENANVDE
VEFKPDTVIKLFLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMK
MRKVLKHQQLLAEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA
NT seq 2331 nt   +upstreamnt  +downstreamnt
atgtcgtccagccggacccagaacccccacggactgaaacagatcggcctggaccagata
tgggacgacctgcgggcgggcatccagcaggtctacacgcggcagagcatggccaagtcg
cgctacatggagctctacacacatgtctataactactgcaccagcgtccaccagtccagc
cagacccggggccccgtccctccagccaaaccctccaagaagtccaccactccgggcggc
gcgcagttcgtcggcctggaactctacaagcggctcaaggagttcctgaagaactacctg
accagcctgctgaaggacggcgaggacctgatggacgagtgcgtgctgaagttctacacg
cagcagtgggaggactaccgcttctccagcaaggtcctgaacgggatctgcgcctacctc
aaccgccactgggtccggcgggagtgtgacgaggggcggaaaggcatctacgagatctac
tccctggctctggtgacctggagggagtgtttattccgacctctaaacaagcaggtgacg
aacgccgtcctgaagctgatcgagagagagaggaacggcgagaccatcaacacccggctg
atcagtggtgttgtccagtcctacgtggagctgggcctgaacgaggaggacgccttcgcc
aaaggtcccacgctgtccgtctacaaggaatacttcgagtgccagttcctgaccgacacg
gagcgcttttacacgcgcgagagcaccgagttcctgcagcagaacccggtcaccgagtac
atgaagaaggccgaggcccggctgctggaggagcagcgccgcgtccaggtctacctgcac
gagtccacgcaggacgagctggcccgcaagtgtgagcaggttctgatcgagaagcacctg
gagatcttccacaccgagttccagaacctgctggacgccgacaagaacgaagatctgggc
cggatgtacaacctggtgtcgcggatcacggacgggctgggcgagctcaagaagctgctg
gagacccacatccacaaccagggcctggccgccatcgagaagtgtggcgaggcggcgctc
aacgaccccaaagtctacgtccaaaccacgctggacgtccacaagaagtacaacgcgctg
gtcatgtccgccttcaacaacgacgccggcttcgtggccgcgctcgacaaggcgtgcggt
cgcttcatcaacaacaacgccgtcaccaggatggcccagtcctccagcaaatcccccgag
ctgctggcccgatactgcgactccctgctcaagaagagctccaagaacccggaggaggcg
gagcttgaggacacgctgaaccaagtgatggttgtgttcaagtacatcgaggacaaagac
gttttccagaagttttacgccaagatgctggccaagcgcctggttcaccagaacagcgcc
agcgacgacgccgaggccagcatgatctccaagctgaagcaagcgtgtggctttgaatac
acgtccaagctgcagcggatgttccaggacatcggcgtcagcaaagacctcaacgaacag
ttcaagaagcacctcagcaactccgagccgctggacctggacttcagcatccaggtgctg
agctccgggtcctggccgttccagcagtcctgcaccttcgctctgccttcagagctggag
cggagctaccagcgcttcacggcgttctacgccagcaggcacagcggcaggaagctcacc
tggctctaccacctgtccaaaggagagctggtcaccaactgcttcaagaacaggtacacc
ctgcaggcctccaccttccagatggccatcctgctgcagtacaacacggaggacagctac
acggtgcagcagctgaccgacagcacgcagatcaaaaccgacatcctggttcaggttctg
cagatcctgttgaagtccaagctgctggttctggaggacgagaacgccaacgtggacgag
gtggagttcaaaccggacacggtcatcaagctgttcctgggatacaagaacaagaagctg
agggtgaacatcaacgtgccgatgaagacggagcagaagcaagagcaggagacgacccac
aagaacatcgaggaggaccggaagctcctgatccaggccgccatagtgaggatcatgaag
atgaggaaggttctgaagcaccagcagctcctggctgaagtcctgaaccagctgtcgtcc
cggttcaaacccagagttcccgtcatcaagaaatgcatcgacatcctgatagagaaggag
tacctggagcgagtggacggagagaaggacacctacagctacctggcctga

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114152468
Entry
114152468         CDS       T05908                                 
Symbol
skp1
Name
(RefSeq) S-phase kinase-associated protein 1
  KO
K03094  S-phase kinase-associated protein 1
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03083  Polycomb repressive complex
xco04110  Cell cycle
xco04114  Oocyte meiosis
xco04120  Ubiquitin mediated proteolysis
xco04141  Protein processing in endoplasmic reticulum
xco04310  Wnt signaling pathway
xco04350  TGF-beta signaling pathway
xco05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    114152468 (skp1)
   04120 Ubiquitin mediated proteolysis
    114152468 (skp1)
  09126 Chromosome
   03083 Polycomb repressive complex
    114152468 (skp1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    114152468 (skp1)
   04350 TGF-beta signaling pathway
    114152468 (skp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xco04131]
    114152468 (skp1)
   04121 Ubiquitin system [BR:xco04121]
    114152468 (skp1)
   03036 Chromosome and associated proteins [BR:xco03036]
    114152468 (skp1)
Membrane trafficking [BR:xco04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    114152468 (skp1)
Ubiquitin system [BR:xco04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Adaptor protein
     114152468 (skp1)
   Cul7 complex
     114152468 (skp1)
Chromosome and associated proteins [BR:xco03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     114152468 (skp1)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     114152468 (skp1)
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 114152468
NCBI-ProteinID: XP_027886175
LinkDB
Position
11:complement(5352648..5358743)
AA seq 163 aa
MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
NT seq 492 nt   +upstreamnt  +downstreamnt
atgcccacgattaaactccagagctctgatggggaaatctttgaggtggacgttgagatc
gccaaacagtccgtcaccatcaagaccatgttagaagatttgggaatggatgatgaagga
gacgatgaccccgtccccctccctaatgtgaatgctgccattctcaagaaggtgattcag
tggtgcacccatcacaaagacgaccctcctccccctgaggacgacgagaacaaggagaag
aggacggatgacattcctgtttgggaccaggagttcctcaaagtggaccaaggcaccttg
tttgaactcatcctggccgctaactatttggacatcaaaggcctcttagatgtcacctgc
aagacagtggccaacatgatcaaaggcaaaaccccagaagagatcaggaagactttcaac
atcaaaaatgatttcacagaggaggaggaggcccaggtacgcaaagagaaccagtggtgt
gaagaaaaataa

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114160562
Entry
114160562         CDS       T05908                                 
Symbol
rbx1
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03420  Nucleotide excision repair
xco04110  Cell cycle
xco04114  Oocyte meiosis
xco04120  Ubiquitin mediated proteolysis
xco04141  Protein processing in endoplasmic reticulum
xco04310  Wnt signaling pathway
xco04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    114160562 (rbx1)
   04120 Ubiquitin mediated proteolysis
    114160562 (rbx1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    114160562 (rbx1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    114160562 (rbx1)
   04350 TGF-beta signaling pathway
    114160562 (rbx1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xco04121]
    114160562 (rbx1)
   03400 DNA repair and recombination proteins [BR:xco03400]
    114160562 (rbx1)
Enzymes [BR:xco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     114160562 (rbx1)
Ubiquitin system [BR:xco04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   114160562 (rbx1)
  Multi subunit Ring-finger type E3
   SCF complex
    Ring finger protein
     114160562 (rbx1)
   Cul2 complex
     114160562 (rbx1)
   Cul3 complex
     114160562 (rbx1)
   Cul4 complex
     114160562 (rbx1)
   Cul7 complex
     114160562 (rbx1)
   Cul8 complex
     114160562 (rbx1)
   Cul9 complex
     114160562 (rbx1)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      114160562 (rbx1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      114160562 (rbx1)
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 zf-RING_16
Other DBs
NCBI-GeneID: 114160562
NCBI-ProteinID: XP_027899021
LinkDB
Position
16:complement(18834479..18836298)
AA seq 108 aa
MAAAMDVDTPSGTNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggccgcagcgatggatgttgacacaccaagcggtactaacagtggcgctagtaagaag
cgcttcgaagtcaaaaagtggaacgcggttgcgctgtgggcctgggacatagtggtggat
aattgtgccatctgtaggaaccacatcatggatctctgtatagagtgtcaggccaaccag
gcgtctgcgacatcggaagagtgtaccgtagcctggggtgtctgcaatcatgcctttcat
tttcactgtatttcccgctggctgaaaaccagacaggtgtgtcctctggacaacagagag
tgggagttccagaaatacggacactag

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