Xiphophorus couchianus (Monterrey platyfish): 114137102
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Entry
114137102 CDS
T05908
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114137102 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114137102 (topbp1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114137102 (topbp1)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
114137102 (topbp1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
114137102 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
RRM_9
Motif
Other DBs
NCBI-GeneID:
114137102
NCBI-ProteinID:
XP_027861421
LinkDB
All DBs
Position
21:7119400..7132205
Genome browser
AA seq
1512 aa
AA seq
DB search
MSKAGKQDFIVKFVESEGSKPDYAVKAYEAILELQSEKYLKTIQEEDVLQMDRKDKSLFV
FIKFTTPAFLHCKKLGCRIVSPLVVLDCLQQQRCVPKAEKPVYNMAMADVTISCTSLDKA
TRGEVMDLVQLMGGRVYLDLNVSVSHLIAGEVGSKKYLVAAKLGKPILLPTWVKACWEKS
QDSLFRYTDLPVEDYLCPVLLGCIVCVTGLSSTERKEVQRLCEQHGAKYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGYSQDESRYMVQRKSSTTTQPNTSTPT
GTSKREDGPSLLGLSNISVNTSAAINDTALTNITMSRMETPDPIDRLDLTVCPADDVLDG
CKLYLSGFPEKNLEKLRRLVSAAGGLRFNQPREDLTHVIVREVDQELQKFLSTATHRPHV
VTAQWLLDCFSKGMLVPEDGYLHPDCLPPASDAVAVSVSARPVARHRSSSGPPVANPSTP
KEPITDEDLLSQYMDDDPTVVDLAPENTSMKSFSAAAEPQPESWTPLHTGGPEQEPLPQG
SLFSGKSFLLVGFGVEAEAQLSALLKEQGGKLLLGRSRVVADFAVVPQLGCTVEATVDEV
VTDTWLVMCVENERVLPLSSNPLFTPVPVREGYLPLKDCVLSVSQFTGAERESLVELAKH
LGANVQDYFVRLANQKKGMLASTHLVLQTPDGTKYQAAKKWGLPAVTMHWILESARTGRR
VTEEKYLVDLPSSPEKEDESFVSGSQKAAPLQPARCSPEIPLLGPQGGKAVTPLDCGRFQ
SKVFRSVLDKMKPRENPSTLTPNQDGGRGKPLQKEPSLQLDTPSRFLVRDQLFRPSFNLK
DALKDLETPSGRSKPGERVETPLTDFINRNLKVALANSSVNNATEMQEVSASPQLAKTID
KEIPQKDSGPLTGVVICVGKKLSKMQSELNAIAASLGADFRWACDNTVTHYIYQGRVGDN
SREYKAVKEKGLHVVSQYWLHACAEEQKHVSESLYPFTYNPKMSLNLSQVPSSSQRSPPL
TRTQRKDATESKHNKSAVVAAEKSAVVHPVSNGCVDQDEVNDTTEKRDTLEMRENLQRQL
QEIMSATKMTTGRRASVRLARMGSGCTDSGPNPPEGSRAGRSGSRRTLEALRVPREAVTD
INTEPSQSEQIVWDDPTAREERAKLADNFQWPGSPSQHSEPLAAAPPPTAENGPRFKDSM
TDSELVEMAACDVINQQMGQKVVAPSSEDPEEDILTPQAPSIAFPLAKPLVAPEPQEEKE
EENQPPRFQLSSLSPQERIDYSHLIEELGGIILDKQSFDPSCSHIIVGSPLRNEKYLAAM
AAGKWILHRSYLEACRSVGHFIQEDDYEWGSCSILEALPSITSQQKRLALAAMRWRKALQ
GSSEHDGAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPSPSPSLYREASHLFADFSRLK
PGDFRVDVAEATAQGVTCLKPEYIADYLMQEPTPPVELYCLTAAPPEEDPCTPSRKRKAA
ADPSKLKKSRLN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagcagggaagcaagactttattgtgaagtttgtggaaagtgaaggatccaaa
ccggattatgccgtcaaagcatatgaggccattctggagctgcagtctgaaaagtattta
aaaaccatccaggaagaagatgttttacagatggaccggaaggacaagtctctgtttgtt
ttcatcaaattcaccactccagctttcctgcactgcaaaaagcttgggtgcagaatagtg
agtccactggtggtgctggactgcctgcagcaacagcgctgtgtccctaaagcagaaaaa
ccagtgtataacatggcgatggccgacgtcactatttcctgcaccagtctagataaagca
acccggggagaggtgatggatctggtgcagctcatgggcggacgggtctatcttgatctg
aacgtatctgtctcacacctgattgctggggaggtgggaagcaaaaagtacctggtggct
gccaagttgggaaaacccatactgctgcctacatgggtcaaagcatgctgggaaaaatca
caagacagtctcttcaggtacacagacctgccagttgaggactacctgtgccccgtgctg
cttggctgtatcgtttgtgtgacgggcctctccagcacagagcgcaaagaggtgcagcgg
ctctgcgagcagcacggggccaaatacaccggccagctcaaaatgaacgagtgcacacat
ctcattgttagtgaaccgacaggtcagaagtacgaatgcgccaggaagtggaacgtgtat
tgtgtgtctttgcactggctgttcgacagcatagagaaaggatactctcaggatgagagc
aggtacatggtgcagcgcaaatcttcaacaaccacacagcccaacacctcaactcctaca
ggcaccagcaagagagaagatggcccatctctgttgggcctgagcaacatttctgtcaac
actagtgcagcgataaacgacaccgctctcaccaacatcaccatgagtcgcatggagacg
ccagaccccatagaccgtttagacctcactgtgtgcccagcagatgatgtgttggatggt
tgtaagttatatttaagtggtttcccagagaagaacctggagaagctgcggcggctcgta
agcgctgctggaggcctgcgcttcaaccagcccagagaggatctcactcatgtcattgtg
agagaagtggaccaggagctccagaaatttctgtccacagcaactcacaggccccatgtg
gtaacagcacagtggctgctggattgtttctccaaaggcatgttggtcccagaggacgga
taccttcacccagactgtctccctccagcttcagacgctgtagctgtctccgtctctgca
cgtcctgtggcgagacatcgctcgtcttccggcccgcctgttgccaacccgagcactccc
aaggaaccaataacagacgaggatcttctctcacagtacatggacgacgaccccacagtg
gttgatctggcaccagagaataccagcatgaagtccttcagcgcagctgcagaacctcag
cctgagtcctggacgcccctccacactgggggacccgagcaagagccgctgccacagggt
agtctgttttctgggaaatccttcctgcttgtgggttttggtgtcgaggctgaggctcag
ctctcggcgctgctgaaagagcaaggaggcaagctgctgttgggccgcagccgagtggtg
gcggacttcgctgtggtccctcagctgggctgcacagtggaggccaccgtggacgaggtg
gtcactgacacatggctggttatgtgtgtggagaacgagcgcgttctgccgctgtcctct
aaccctctgtttacgcccgttcctgtgagggaggggtacttacctctcaaagactgcgtt
ctgtctgtcagccagtttactggagcagagagggagtctctggtggagctggccaagcat
ctcggagccaatgtccaggattactttgtgcgcctggccaaccagaagaaaggcatgctg
gccagcactcacctggtgttacagacccctgatggaacaaagtatcaggcagctaagaag
tgggggcttcctgccgttaccatgcactggatacttgagtctgcacggacagggaggagg
gtgacagaggagaaatatctggtggatctgccctcctctccagagaaagaagacgagagc
ttcgtcagcggatcccagaaagcagctccgctccaacccgctcgttgttccccagaaatc
ccgttgctgggtccgcagggcgggaaagcggtcactccgcttgattgcggtcgctttcag
agtaaagtgtttcgatctgtgttggacaagatgaagcccagagaaaacccgagcacactg
acaccaaaccaagatggcggcagagggaaaccactccagaaggagccgtccctgcaactg
gacactccctctcgattcctggtcagggaccagctcttcaggccgtcctttaacttgaag
gatgcactcaaagatttggagactcctagcggaagatctaaacccggggaaagggtggaa
actccacttaccgactttatcaacaggaacctgaaggtcgctctggcaaacagctcagtg
aataatgccacagaaatgcaggaagtctctgccagcccccagctggcaaagacaattgac
aaggagatcccacagaaagactcaggacccctgactggtgttgtgatctgcgtggggaaa
aaactgagcaaaatgcaaagtgaactgaatgctattgctgcttcgcttggagctgacttc
aggtgggcctgtgataacacagtgacgcactacatctaccagggtcgtgtcggagacaac
tcccgcgaatacaaggcagtgaaggagaagggcctgcatgtggtctcccagtactggctg
catgcttgtgctgaggagcagaagcacgtctcagagtctctgtatcctttcacttataat
ccaaagatgagtctgaacctcagccaggttcccagcagctcccagagatctccgccttta
acacggacacaacgcaaagacgcgactgaatcaaaacacaacaagtctgcagttgttgct
gcagagaaaagcgcagttgtgcatcctgtaagtaatggatgtgttgatcaagacgaggtg
aacgataccacagagaaaagagatactctggaaatgagagagaacctgcaaagacagctt
caggagatcatgtcggccaccaaaatgacaacaggcaggcgggcttctgtcagacttgcc
aggatgggatcaggctgcaccgactcgggtccaaacccgcctgaaggcagccgggccgga
cgcagtgggagcagacgtactctggaagctctgagggtccccagagaagcggtaacggac
ataaacactgagccgtctcagagtgagcagatagtttgggacgatcctacagccagggag
gagagagcgaagctggctgataacttccagtggcctgggagtccatcacaacactcagag
cccctggcggcagcaccgcctcccacagcagaaaatggaccgcgcttcaaggactcaatg
acggactctgagctggtagagatggctgcttgtgacgttataaaccagcaaatgggtcag
aaggtcgtggcgccttcatcagaggatccagaagaggacatcctcactcctcaagctccc
agcatcgccttccctctcgccaaaccgctagtagcaccagagccacaggaagagaaagag
gaagaaaatcagccgcccagatttcagctgtcgtcgctcagccctcaggagcgaattgat
tacagtcatctgatagaggaactcgggggcatcatcctggacaagcagtcttttgacccc
agctgctcccacatcattgtagggagtccactgcgaaacgagaagtatctggccgccatg
gcagccggcaagtggatcctgcatcgctcgtacctggaggcgtgtcgctccgtgggacac
ttcattcaggaggatgattatgaatggggcagctgctccatcttggaggctctgccctcc
atcacctctcagcagaagagactggccttggccgcaatgcgctggagaaaagctttgcag
ggaagctctgaacatgacggagctttcagtggctggaccgtgatgctgaacatcgaccag
agcagagagtcgggtttcaggcggttattgcagtctggtggagcgaaggtgctgcccagc
ccctccccgtcactctacagagaggcctcgcatctgttcgcagacttcagtcgtctcaaa
cccggagacttcagagtggacgtagctgaggccacagcacaaggagtgacatgcttgaaa
ccggagtacattgcagattacctcatgcaggagccgacgccgcccgtcgagttgtactgt
ctgactgcagctccgcctgaggaagatccatgcacaccgtcccgtaagcgtaaagcagca
gccgacccctccaagctgaaaaagagccgtctgaactga
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integrated database retrieval system
