Xiphophorus couchianus (Monterrey platyfish): 114138521
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Entry
114138521 CDS
T05908
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04518
Integrin signaling
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114138521
04518 Integrin signaling
114138521
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114138521
09142 Cell motility
04820 Cytoskeleton in muscle cells
114138521
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114138521
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114138521
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114138521
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114138521
Hyaluronan
Extracellular matrix or blood plasma proteins
114138521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
vWA_SIBA-E
Ssl1
Motif
Other DBs
NCBI-GeneID:
114138521
NCBI-ProteinID:
XP_027863641
LinkDB
All DBs
Position
3:783289..828592
Genome browser
AA seq
2880 aa
AA seq
DB search
MKGAVVLIIIITATAGFWAVSAQPTLEIKKELSECENATLGDIVFLVDSSTSIGEENFRI
VRTFLRNVIQNLDIGPDKVRVGLALYGDRPQKEFLLKDHMDKTAVLDAVEQIAFLRGGTK
TGKAMDFIREEYFTPEAGSRARKHVPQIAVLLTDGNSNDDVSLPAKHLRDLNVFMFVIGV
SQYNYDQLKIIANHPPEDYILTTDSFQTLQSLRNTLLKTVCSSLEIQKIALANKFADIFL
LMDSALGPRQFIFFRNELIRFIDQIDAGQSSYRVGLAQYRQDVQTEFYLNAHKTKQQYTK
ALKSIQQLPQTGQGPNLGAALKYAGQNFFLPENGGRANQGAQQFLVVVLGEKPKELLYLA
GQDVRSQGVSVVGMSSAVLVGDMLSFADSAFNTLRITQLKDFFTTQEVETAIEDCQRVNT
ADVVFIIDESGGIGNNFQLIRSFVQSLIGSLNVNQTGVRVGIVTYNEAPKVHAYLNSFQD
RTEAQQFIKLLPYRGGGSNTGAALRFTLESVFKGRGKRKDVQKVAIVVTDSKSQDSVKEA
VAELHRFPVRVFAIGVNEKTPDLYDMASYPINSHVFAVDNFMQLKPLRKIMQKSICSAII
QGSVNSFKNSADTKEACYQKDEADIIFLIDDSDNIDSSDLSDTKKFITNFLGEFRDRLDH
IRIGLVKYSNLAQLKFDRMALSDVSKALNDVNHEGGRTNTGRALTFMERYFKKVPYSQGS
TYLIVITAGESEDSVTRPAEKIRAQGVMVFAVGVKRSNKAQLQEISGDPDRTFKVRDYYF
LQWIKNDILRPICGPAVCEDAPSDVIFLTESSERISAGNFRKMKEFMKSVVTKSIVGMND
MRVGVMQFSTKTKLEFRLNRYFRKDEILGAIDNMEQQNGGVETGKALTEVSQLFSETEGG
RPTLRQNLVLITFNKATDEFKGPAEALRQKGVLIFSIGVVNSNYSQLYEISSSSDKVINE
ANVDLISELDGMLALKFCDPHRDCKKIEKADIIFLVDGSGSIENRFGSMQVFMESVVSRS
IVSRDSTRFGAILFSNEPKIKFTLETYNSKGEIRNAIRALVPPKDNTYTSEALDYSLQFF
NEEHGGRRRFRVPQILMVITDGAATNPANLGKNSDALRANNVTVFSIGVENANKDELLIM
AGNNQSNVFYVDKFDQLETLYRQISGVVCSITKHPCELMDLVFLIDRSGSITSTNHNIVK
NFTAELVTRLEISDEHTHVGLGQFSANFLHEFYLNNYYTKKGIVDHINDITYSGGETYLG
RALTSIKDYFSPLRGSRIQRKVPQTLVVLSDGNSYDNVEKPANELRALGIDIFAVAIGDV
FRTQLLQITGDPRKIITVGDINNLPNFKTKVVDAICKEEKLVPTIVPSPLPVISTVSPFP
PPACELMDLVFLIDHSGSITSTNHNIVKTFTAELVTKWEISDKRTHVGLGQFSANFLHEF
YLNNYYSEKDIVDHINDITYSGGETYLGRALTSIKDYFSPLRGSRIQRKVPQTLVVLSDG
NSYDNVEKPANELRALGIDIFAVAIGDVFRTQLLQITGDPRKIITVGDINNLPNFKTKVV
DAICKEEKLVPTIVPSPPPVISTVSPFPPPACELMDLVFLIDHSGSITSTNHNIVKTFTA
ELVTKWEISDKRTHVGLGQFSANFLHEFYLNNYYSEKDIVDHINDITYSGGETYLGRALT
SIKDYFSPLRGSRIQRKVPQTLVVLSDGNSYDNVEKPANELRALGIDIFAVAIGDVFRTQ
LLQITGDPRKIITVGDINNLPNFKTKVVDAICKEEKLVPTIVPSPPPVISTVSPFPPPAE
KCTIDIAVGFDISAGSSNVPLFRLVTPLQEIVHRVATVNDLCCSASVPTRISFSIVGVDG
LSLFDTNFEAFKEDVLRNVMDFPWSRATSLNRAMLKYFRAKFQSKSRAKVKVLLIFSDGL
DEDVAILKQESEQLRASGVSALFAVALKDATAAQLQMVEFGRGYYYQAPLRIRDLSISST
ILQQMSSVADRVCCNVSCKCSGPPGPRGPPGQPGTKGSPGLKGHGGYPGDEGYHGGRGPP
GLTGTQGTQGCPGTRGSKGSHGFSGDRGEDGEDGLNGVDGEQGKEGGDGMKGQKGDPGSQ
GIPGIRGEEGLKGDRGLRGDPGEPGRNNRASGPKGERGNQGDPGTPGRQGRPGTDGEDGN
PGRDGRRGASGSTGAPGDKGRRGSPGVPGASGPKGPRGDRGPQGPKGTPGFPGRQGDPGR
AGGPGDGGRLGANGQKGQPGEPGPQGAAGPRGPLGPPGEEGRDGAGPPGAAGAKGSDGFP
GYPGPSGPKGEKGTKGFPGGRGSRGREGNSGRTGELGEPGEPGFPGRRGRPGVPGNAEQT
ECELITYIRDQCACCHDPPRCPAVPTELVFALDMSEDVTGVDFEDQRRAVLSLLQDVNMA
ENNCPAGARVSVVAFSRHSRYLIRLQERRSRTRLLEAVQNLARERTAERRHLGAAMRFVG
RNVFKRVRPGKTTRKVAVFFTGGQTQDPDDVLTAVMELRAQNVASAVIALRNVPRINRAL
EADDSGNSVFALLRRQQDLDRIRTCVLCSDPCRRSSECSFILDPPAPLQAELDLALVLDG
SREVQADQYAGAQLLLASVVEQLAVSAQPRRPGAQARVAALQGDMLEFGPQTYQNRDGMK
THLQTARQRSGSSALDLMLDLALKEALPPQAGQPRRKRALLAVVAARTARRDGAALRRAA
LRARCNGVAVFVVAVGGRYDRTQVEELAGLPVRQHLVHVGRLQAEERGYVLRFFRVFLSA
LNRGLNVYPPPSLRETCSQRTEADDLLTGETALADDPQAGRSSQQEEVIPAAWRGQSSAS
RSADVCLLAKNSGGCRKPSVLWYHDARTGRCALFLYNGCGGNQNRFRTRERCEEMCVTKS
NT seq
8643 nt
NT seq
+upstream
nt +downstream
nt
atgaagggggccgtggtcctcatcatcatcatcaccgccaccgccgggttctgggctgtc
tctgctcagccgacacttgaaattaaaaaagaactttctgagtgtgaaaacgccacattg
ggggacatcgtcttcctagtcgacagctccactagcatcggcgaggaaaactttaggata
gtccgcacctttctcagaaatgtcatccagaacctcgacattggccctgataaagtacga
gtcggcttggcgctgtacggagaccgtccccaaaaggagttcctgctgaaagaccacatg
gacaagacggccgtgttggacgcagtggagcaaattgctttccttcgcggtggcacaaaa
acgggcaaggccatggacttcatccgggaggaatacttcacacctgaagccgggagcaga
gccaggaagcatgttcctcagatcgctgtgctcttgactgatggaaactccaacgacgat
gtgtccttacctgccaagcatctccgggatctcaatgtctttatgtttgtcatcggagtg
tctcagtacaattatgatcagctgaagatcatcgctaaccacccaccagaagactacatc
ctgaccaccgacagcttccagactctgcagagtttaagaaacactctgctgaaaaccgtg
tgctcctccctggagatccagaaaatagctttggccaataaatttgcagacatctttctc
ctgatggacagtgccttagggccgcgacagttcatctttttcaggaatgagttgatcaga
tttatcgaccagatagacgctggacagtcaagctaccgtgtcggtttggctcagtatcgc
caggatgtacagactgagttctatctcaacgctcataaaactaaacaacagtacacaaaa
gcattgaaaagcatccaacagctgccacaaactggccaaggaccgaacctgggagctgct
ctcaagtacgcaggtcaaaactttttcctgcctgaaaatggcggccgtgcaaaccaagga
gctcaacagtttttggttgttgttcttggagaaaagcctaaggaactcttatatttggcc
ggtcaagatgtcagatcccaaggggtatctgttgtaggcatgagttcggctgtgctggtg
ggtgacatgctaagctttgcggacagtgcctttaacactctgaggatcactcagctgaag
gatttcttcaccacccaggaagtggaaacagccattgaagactgtcagagagtcaacact
gcagacgtcgtcttcatcatcgatgagtcaggaggcatcgggaacaacttccagctcatc
cggagctttgtgcagtcacttatcggcagcctgaacgtcaatcagacgggagtcagagtg
ggaattgttacctacaatgaggctcccaaagtccacgcttatctcaacagcttccaggac
cgaacagaagctcagcagttcatcaagttgctcccttaccgcggcggtggctccaacact
ggagctgctctgaggttcactctggagtcagtcttcaaagggaggggcaaaaggaaggat
gtgcagaaggtagctattgtggtcacagacagtaaatcccaggatagcgtgaaggaagcg
gtggcagagctacatcggtttccagtcagagtttttgcgataggagtaaatgagaagaca
ccagacctgtacgacatggcatcttatcccatcaacagccatgtttttgctgtggacaat
ttcatgcaactaaaacccttgaggaaaatcatgcagaagagtatctgcagtgccatcatt
cagggctccgtcaactcctttaaaaacagcgccgacaccaaggaagcatgctatcagaag
gatgaagcagacatcatcttcctcattgacgactcagacaacatcgattcctctgacctc
tctgacacaaagaagttcatcactaactttcttggagaatttcgtgacagacttgatcat
attcgcatcgggcttgtgaaatactccaacttagctcagttgaagtttgaccggatggca
ctctcagacgtgagcaaagctctgaatgacgttaatcatgaggggggtcggaccaacaca
gggagagcgctcacattcatggaaagatatttcaagaaggtaccctacagtcagggttcg
acgtatctgatcgtcatcactgcaggagagtccgaagacagcgtcacacgtccagcagag
aaaataagggcgcaaggcgtcatggtctttgctgttggagtaaaaaggtcaaacaaagct
caactgcaggagatctctggtgatccagacaggacctttaaagtcagagattactatttc
cttcagtggatcaaaaacgatattctaagaccaatctgtggaccagcagtttgtgaggac
gctcctagcgacgtcatcttcttaaccgagagctcagagagaatctctgcaggaaacttt
aggaaaatgaaagaatttatgaaatctgtcgttaccaagtctattgtgggcatgaatgac
atgcgtgtgggtgtcatgcaattcagcactaagacaaaactagagtttcgtctgaaccgg
tacttcaggaaagatgaaatactgggagccatcgataacatggagcagcaaaatggcggg
gttgaaacaggaaaggccctcactgaagtttcacagttgttcagtgagactgaaggagga
cgtcctacactgaggcagaacctggtgctgatcaccttcaacaaagcaaccgatgaattc
aaaggtccagcagaggctctgaggcaaaaaggagtgttaatcttttcaatcggagtggtg
aacagtaactacagccagctgtacgaaatcagtagctcttcagataaagtcatcaatgaa
gcaaatgttgatctaataagtgaactggacggcatgttggccttgaagttctgcgatcca
cacagagattgtaagaagattgaaaaggctgatataatattcctggtggacggctcagga
agcatagaaaaccgcttcggaagcatgcaagtgtttatggagtctgtagtgagccggagc
atagtcagtagggactctacccgttttggagccattcttttctccaacgaacctaaaatc
aagtttactctggaaacctacaactccaaaggagaaattcgtaatgctataagagctctg
gtgccgccaaaagataacacatacaccagcgaagctttggactattcattgcagttcttt
aacgaggaacacggtggcaggagacgtttccgcgttcctcagattctcatggtgatcaca
gatggggcagcaacaaaccctgctaacctaggaaaaaattcggatgcactgcgagccaat
aacgttactgtcttcagtataggtgtagagaacgcaaacaaggatgagctgctgatcatg
gcgggaaataatcaatccaatgtcttctatgtggataaatttgaccagctggagactctg
tacagacagatatctggagtcgtctgcagtatcaccaaacatccttgtgaactgatggac
ctggtcttcctgattgatcgctctggcagcatcacctccacaaatcacaatattgtgaaa
aacttcacagcagaactagtgaccaggttggaaatcagtgatgaacatacacacgttgga
ctcgggcagttcagtgcaaatttcctacatgagttttaccttaataattactacactaaa
aagggcatagttgatcacataaacgacataacatattcaggtggagaaacctacctcggc
agagccctgacttctatcaaggattatttcagcccgttgcgaggcagccgcatccagaga
aaagtgccccagactctggtggtgctttcggatggtaattcttacgacaatgtggaaaag
ccagccaatgagctcagagcacttggcattgatatatttgctgtagcaattggagatgtt
tttcgaacgcagctccttcagatcactggtgatccacgaaaaattatcactgtcggtgac
ataaacaacctgccaaacttcaagaccaaggtggttgatgccatctgcaaggaggagaag
cttgttcccactattgttccctctcctcttcctgttatttctactgtttctccttttcct
ccccctgcttgtgaactgatggacctggtcttcctgattgatcactctggcagcatcacc
tccacaaatcacaatattgtgaaaaccttcacagcagaactagtgaccaagtgggaaatc
agtgataaacgtacacacgttggactcgggcagttcagtgcaaatttcctacatgagttt
taccttaataattactactctgaaaaggacatagttgatcacataaacgacataacatat
tcaggtggagaaacctacctcggcagagccctgacttctatcaaggattatttcagcccg
ttgcgaggcagccgcatccagagaaaagtgccccagactctggtggtgctttcggatggt
aattcttacgacaatgtggaaaagccagccaatgagctcagagcacttggcattgatata
tttgctgtagcaattggagatgtttttcgaacgcagctccttcagatcactggtgatcca
cgaaaaattatcactgttggtgacataaacaacctgccaaacttcaagaccaaggtggtt
gatgccatctgcaaggaggagaagcttgttcccactattgttccctctcctcctcctgtt
atttctactgtttctccttttcctccccctgcttgtgaactgatggacctggtcttcctg
attgatcactctggcagcatcacctccacaaatcacaatattgtgaaaaccttcacagca
gaactagtgaccaagtgggaaatcagtgataaacgtacacacgttggactcgggcagttc
agtgcaaatttcctacatgagttttaccttaataattactactctgaaaaggacatagtt
gatcacataaacgacataacatattcaggtggagaaacctacctcggcagagccctgact
tctatcaaggattatttcagcccgttgcgaggcagccgcatccagagaaaagtgccccag
actctggtggtgctttcggatggtaattcttacgacaatgtggaaaagccagccaatgag
ctcagagcacttggcattgatatatttgctgtagcaattggagatgtttttcgaacgcag
ctccttcagatcactggtgatccacgaaaaattatcactgttggtgacataaacaacctg
ccaaacttcaagaccaaggtggttgatgccatctgcaaggaggagaagcttgttcccact
attgttccctctcctcctcctgttatttctactgtttctccttttcctccccctgctgaa
aagtgcaccatcgacatcgccgtagggtttgatatttctgcaggttccagcaatgtgccc
cttttcagactggttacgcccctccaggaaatcgtccatcgcgttgctacggtgaacgac
ctgtgttgctcggcttctgtcccgacccggatctccttcagtatcgtaggtgtcgatggc
ctctccttgttcgacacaaactttgaggctttcaaggaggatgttctgaggaacgtcatg
gactttccgtggtcccgggccacttcactcaaccgtgccatgctcaaatatttcagggcc
aagtttcagtccaagtccagagccaaggtcaaggtgctgctaattttctctgatggactt
gatgaagacgtggcgatactgaagcaggaatctgagcagctaagagcctctggagtcagc
gccctgttcgccgtggccttgaaggatgcgactgccgcacagctccagatggtcgagttc
ggacggggatactactaccaggctcctctgagaatcagagacctgagcatcagtagcacc
atcctgcaacagatgagctctgtagcggatcgggtttgctgcaacgtttcgtgtaaatgt
tcgggacctccgggccctcgtggtcctcctgggcaacctggaacaaagggctcgcctggt
ctgaagggccacggcggctatcctggagacgaaggctatcatggcgggcgagggcctccg
ggtctgacggggactcagggcacccagggatgtccgggaaccagaggatcgaagggatct
cacggcttctctggagacaggggtgaagatggagaagatggactgaatggagtggatgga
gaacagggaaaggagggaggggatgggatgaaaggacagaaaggagatcctggaagccag
ggaatcccagggatcagaggcgaggaaggactgaaaggagaccgaggcctgagaggagat
ccgggcgagccggggcgcaacaacagggcatcaggacccaaaggagaacgtggcaaccag
ggggacccgggaacgcctggacggcagggacgtcccgggacggacggagaggacgggaac
ccaggtcgggacgggaggcgaggcgccagcggctccacgggcgcacctggagacaaaggg
agacgaggatcaccaggtgtgcctggagcttcaggtccaaagggacccagaggggacaga
ggcccgcagggacccaaagggacgccggggtttcctggacggcagggtgacccgggacgc
gctggaggaccgggagacggcggacgacttggtgccaacggacagaagggccagccagga
gagccgggcccccagggggcagcggggccgcgggggcccctggggccgccgggtgaggaa
gggcgagacggcgcaggacccccaggagccgcaggggcaaaggggtctgatggtttccct
ggttaccccggtccgtcgggtccgaagggagagaaaggaaccaaaggatttccgggtggg
agagggagccgaggtcgcgagggaaactcgggcagaaccggagagctcggcgagcccgga
gagcccggattccccggacgcagaggacggccaggtgttcctggaaacgcagaacaaact
gagtgcgagttgatcacctacatcagggaccagtgtgcttgttgccacgatccgccccgc
tgccccgccgtccccactgagctggtcttcgccctggacatgtctgaggacgtgacgggg
gtggacttcgaggaccagcggcgggccgtcctctccctgctgcaggacgtcaacatggcg
gagaacaactgtccggccggcgcgcgggtgtcggtggtggcgttcagccggcacagccgc
tacctgatccgcctgcaggagcgccgcagcaggacgcggctgctggaggcggtgcagaac
ctggcccgggagcgcaccgccgagcgccgccacctcggcgccgccatgcggttcgtgggc
cggaacgtcttcaagcgggtccggcccgggaagacgacccggaaggtggccgtgttcttc
accggcggccagacgcaggaccccgacgacgttctgaccgccgtgatggagctccgggcg
cagaacgtcgcttccgccgtcatcgctctgaggaacgtgcccaggatcaaccgggccctg
gaggctgacgactcgggaaactctgtgttcgctctgctgaggagacagcaggacctggac
cggatcaggacgtgtgtcctctgctccgacccctgcagacgctcctcagaatgctccttc
atcctggacccgccggcccccctgcaggccgaactggacctggctctggttctggacggc
tccagggaggtccaggcggaccagtacgccggcgctcagctgctgctggcctctgtggtg
gagcagctggccgtcagcgctcagccccgccggcccggcgcccaggcccgggtggcggcg
ctgcagggcgacatgctggagtttggcccgcagacctaccagaaccgggacgggatgaag
acccacctgcagacggcgcggcagcggagcggctcctcggcgctggacctgatgctggac
ttggccctgaaggaggcgctgccgccgcaggccggccagccgcgcaggaagagggcgctg
ctggccgtggtggcggctcggacggcccggcgggacggcgccgcgctgcgccgtgctgcc
ctcagggcccgctgcaacggcgtggccgtgttcgtggtggcggtgggcggacgctacgac
cgaacgcaggtggaggagctggccggcctcccggtccggcagcacctggtccatgtcggc
cggctgcaggccgaggagcgcggctacgtcctgcgcttcttcagggtcttcctgtccgcc
ctcaacagaggtttgaacgtttatcctcctccgtctctcagagagacctgcagccagcgg
accgaggcagacgacctgctgactggagagacggcgttggctgatgacccccaggctgga
aggtcaagtcagcaggaagaggtcatccctgctgcgtggagaggtcaaagttcagcctca
agatcagcagacgtctgtctccttgctaagaacagcggcggctgcaggaagccgtccgtt
ctctggtaccacgacgcccggaccggccgctgcgccctcttcttgtacaacggctgcggc
ggcaaccagaaccgcttccggacccgcgagcggtgcgaggaaatgtgcgtgacgaagagc
taa
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integrated database retrieval system
