Xiphophorus couchianus (Monterrey platyfish): 114138890
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Entry
114138890 CDS
T05908
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114138890 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114138890 (polr1a)
Enzymes [BR:
xco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114138890 (polr1a)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
114138890 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Nop14
Motif
Other DBs
NCBI-GeneID:
114138890
NCBI-ProteinID:
XP_027864149
LinkDB
All DBs
Position
23:27053024..27096619
Genome browser
AA seq
1689 aa
AA seq
DB search
MLFSKEVPWRRLEGMSFGLYSTEEIRKLSVKTITNSKLLDSVGNVAQNSLYDLALGPADI
KEVCSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGTCLSCHMLTCPRATIHLL
VNQLRLLEHGAMEEVHLVERVLNQHLEENPKATGDEIEQVLREFTSMVVGANAKASQNSK
PIKHVVEKKSSLINDFWRVQLNTRKCPYCRGGRITVRREHNSKLIVTMPTGGQTAENTED
LLTGKRVFLTASTAREHISKVWEKEGFFLKFLFPGLEESSGSEGQKGFYPDLFFLELLVV
PPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVIRKLLALIAGEKQTEEEEEEEEVTLEP
EDQTFLSGISGATLPDKLYNTWIRLQSHVNIVFDSDMDKLITDKYPGIRQILEKKDGLFR
KHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPN
VHPGASMVINEDGRKTILSPSSAAQREAVAKQLLTPCPGPQKMPMKIVNRHIKNGDVLLL
NRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQTELGRAEAYT
LVSTNQQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFLTKDQYTELVYRGLTDKTGRVRL
LAPAVLKPQQLWTGKQVVSTLLLNILPDKAVPLNLTGKAKIPSKAWIQLPPRSSPGYNPE
SMCESQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQ
LYRGFTLGVEDILVKPGANMRRKQIIQESLKIGTKALQAAYNLPPTVTPAEAASRWQDAH
LSPDQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTPFPDNNLQLMVQSGAKGSTVNTM
QISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMA
GREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVIQFLYGEDGLDIPKTQ
FLQPRQFPFIENNHEVIRRSQDLDSVLAHLDPHTAARHFTAIQRWKTKRELACPRRGAFL
LFSQKKLAKLREAMPSTEPLPAQDPAVLQLVKDWHSLDEAGRAKYTRRSSRCPEPTLGLF
RPDVCFGSVSENFHDITEKYLQNRGNATEDSMETQRLRQLLHYKWQRSLCDPGEAVGLLA
AQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKAL
KRAKTLRKQLARVCLAEVLQKVDVVETLRIEAYQRLQSFKVTFHFLPPERYRDDKLLTPH
QILHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPGDKNMDEDGTAGVQNGGGEEEEE
GEIVDDQGDEGDADASDAKRKSKQAEEVDYESEDEGEGGDAEEDQGEEENSQANAAEETQ
PESADTGEQQQQQKKETRVGQGGESSVQMRVNSVLSSNSAIKRYSFDQQEELWCEVELEF
PLNRVHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTTKSGEKQTVLNTEGINMHEIFKY
NDILDVNKLYSNEVHAMASTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFE
GVYKPLNRHAIMSNSSPLQQMTFETSFKFLKQATMLGSRDQLVSPSACLVVGKVVKGGTG
LFELKQPLQ
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccaaagaagtgccatggcggcggctggagggcatgtcgtttggcttgtac
tcaaccgaagaaataaggaagttgagcgtgaaaaccatcaccaactccaagcttctggac
tctgttggaaatgtggcccagaacagtttgtatgacttggcgctggggcctgcagacatc
aaagaggtctgttccacctgctgtcaggatttcaacaactgtccagggcactttggacac
atagagctgcctctaccagtctacaacccactgttctttgataaactctacctgttgatc
cgcggcacgtgcctgtcgtgtcacatgttgacgtgtccccgcgccaccatccacctgctg
gtgaaccagctccggttactggagcatggagccatggaggaggtccatcttgtggagaga
gttcttaatcagcaccttgaagagaaccccaaagccacaggagacgagatcgagcaggtg
ctgagggagtttaccagcatggtcgttggagcgaacgccaaggcctcacagaactccaaa
cccattaaacatgtggttgagaagaagagcagcctgataaatgacttctggagggtccag
ttgaacaccaggaagtgtccgtactgcagaggtggcaggataacggtgcgtcgcgaacac
aacagcaagctgatcgtcaccatgccaacgggaggacaaactgctgaaaacacagaagat
cttctgactggaaagagagtgttcctcactgccagcaccgccagggagcacatcagtaaa
gtctgggagaaagaaggtttcttcctgaagttcctgtttcctggtctggaggagagctca
gggtctgagggacagaagggtttctacccggacctgttcttcctggagctgctggtggtt
ccaccctgcagatatcgccccatcaatcgcctaggcgaccagatgttcaccaacggccag
acggtcaacatgcaggctgtgatgaaggactgcggcgtcatcaggaagcttctggctctc
attgcaggagagaagcaaactgaggaggaggaggaggaggaggaagtgacgttggagcca
gaggatcagacgttcctgtcgggaatcagcggagcgacgttaccggataagctctataac
acgtggatccgcctgcagagccacgtcaacatcgtcttcgacagtgacatggacaaactg
ataacggataaataccccgggatcagacagatcctggagaagaaggatggattgttccgg
aagcacatgatggggaagcgggtggactacgccgcccggtccgtcatttgtcccgacatg
tacatcggaaccaacgagatcgggatccccatggtgtttgccaccaagctgacctaccct
cagcccgtcacaccctggaacgtgaaggagctccggcaggccgtcctcaacgggcccaac
gtccaccccggcgcctccatggtgattaacgaggacggcaggaagaccatcctgtcgccc
agcagcgccgcgcagagggaggcggtcgccaagcaactgctgacgccctgtcccggtcca
caaaagatgcccatgaagattgtgaatcgacacataaagaacggagacgttctgctgctc
aacagacagcccaccctgcacagaccctccatacaagcccactgcgctcgcatcttaccc
ggagagaaggtcctgcggcttcactacgccaactgcaaggcgtacaacgccgactttgac
ggcgacgagatgaatgcccacttccctcagaccgaactgggccgagccgaggcctacacg
ctggtcagcaccaaccagcagtacctcgtccccaaggatggtaaacctttagcgggcctc
atccaggaccacatggtgtcaggaaccaagatgaccatcagaggctgcttcctcaccaag
gaccagtacaccgagctggtgtaccgagggctgaccgacaagacaggccgggtcaggctg
ctggcccccgccgtcctcaaacctcagcagctgtggaccgggaagcaggtcgtctccact
ttattgctgaacatcctcccagacaaagccgtcccgcttaacctcaccggcaaagccaaa
atccccagcaaggcttggatccagctcccgcctcgatcttctccggggtacaacccggag
agcatgtgtgaatcacaggtggtgatccgtcagggcgagctgctggtcggcgttctggac
aaagcgcactacggctcgtcggcctacgggttggtccactgctgctacgagctgtacgga
ggggagaccagcgggaagctgctcagctgcctggctcgactcttcaccgcctacctgcag
ctctacaggggcttcactctgggagtggaagacattctggtgaaacctggagccaatatg
cggaggaaacaaatcatccaagagtctctgaaaatcggcaccaaagccctgcaggctgcc
tacaacctgcctcccaccgtgactccggctgaagccgccagtcggtggcaggacgctcac
ctcagccccgaccagagagacttcagcatggccgatcacaaattcaaggaagtggccaac
caagtgaacaacgacatcaacaaggtgtgtatgccggtcggactgcacaccccgttccca
gacaacaacctccagctcatggtgcagtctggagctaaaggctccaccgtcaacaccatg
cagatctcctgcctgctgggtcagatcgagctggagggccgcaggccgcccctgatgcct
tcaggaaagtttctgccttgcttccagccatacgacccttcacccggcgcggggggcttc
gtttctggacgcttcctcacaggaatcaaaccacaggagtttttcttccactgcatggct
ggtagagaaggactggtggacacggctgtgaaaacgtcccgatcaggatatctccagcga
tgcatcataaagcacctggagggtctggtggtgcagtacgacctgaccgtcagagacagc
gacggctccgtgatccagttcctgtacggcgaggatgggctggacatccccaagacccag
ttcctgcagccgaggcagttcccgttcatcgagaacaaccacgaggtcatcaggaggtca
caggacctggacagcgttctggcccatttggaccctcacactgcagcccgccacttcaca
gccatccagcgttggaaaacgaagagggagctggcgtgtcctcgcagaggagcctttctg
ctgttttcccagaagaagttagcgaaactgcgagaggccatgccgtcaactgagccgctg
cccgctcaagatcccgcagtgctgcagttggtgaaggactggcactctctggacgaagcc
ggcagagccaaatacaccaggcggtcgtcccgctgccccgagccgaccctgggtctgttc
aggcctgacgtctgcttcgggtcggtgtcggaaaacttccatgacatcaccgagaagtac
cttcagaacagaggcaacgccacggaggacagcatggagacacagaggctgcggcagctg
cttcactataagtggcagcgctccctgtgcgacccgggggaagctgtgggcctgctggca
gctcagtccataggcgagccctccacccagatgaccctcaacaccttccacttcgcgggc
agaggagagatgaacgtcactctgggaatcccccgactgagggagatcctgatggtggcc
agttccaacattaaaacccccatgatgagcgtcccggtgctgaacaacaagaaggccttg
aagagggccaaaacgctgcggaaacagctcgccagagtctgcctggctgaggtgctgcag
aaggtggacgttgtcgagacgcttcggatcgaagcttatcaaagactgcaatcgtttaaa
gtcacctttcacttcctgcctcccgagcgttaccgtgacgacaagctgttaactccccat
cagatcctccactacatggagacgaggtttttccgtctcctcctggaagccattaaaaag
cgctcagccaagctggcctccatcgccgtggagacgaggaaggccacccctggagataaa
aacatggacgaggatgggaccgcaggggtccagaacggcggtggagaagaggaggaggaa
ggagagatagttgatgaccagggggatgaaggagacgctgatgcgtcagacgccaagagg
aaaagcaaacaggcggaggaggtagactacgaaagcgaagacgagggcgaaggtggcgat
gctgaagaggatcagggcgaggaggagaacagccaggcaaacgctgcggaggagacccag
cctgagtcagcagacactggagagcagcagcagcagcagaagaaagaaacgagagtgggg
caagggggagagtcctcggtccagatgagggtgaactcggttctgtcgtctaactcagcc
ataaagagatactccttcgatcagcaggaagaactctggtgtgaggtggagctggaattc
cctttgaacagggtccacttcgacctgacctcggtcctgtcgactctggcccagaatgcc
gtcatcatggagacccgaggcctgacgcggtgcctgctgagcgagaccacaaccaagtct
ggggaaaagcagacggttctcaacacagagggcatcaacatgcacgaaatctttaagtac
aacgatatcctggacgtcaacaaactgtactccaatgaggtccacgccatggccagcacc
tacgggatcgaagtggctctgaaagtcatagagaaggagatcaaagacgtctttgcagtt
tatgggattgaggttgacccccggcatctgtcgttggtggcagactacatgtgtttcgaa
ggtgtctacaagccgttaaaccgacacgccatcatgtcgaactcttcccctctgcagcag
atgaccttcgagaccagcttcaagttcctcaaacaggccaccatgctggggtcacgtgat
cagctggtttctccctcggcctgcttggttgtggggaaggtggtcaaaggtggaacaggc
ctgtttgaactgaagcagcctctgcagtag
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integrated database retrieval system
